Recent Publications

2017

Lei, X., Seldin, MM., Little, HC., Choy, N., Klonisch, T., and Wong, GW., 2017, “C1q/TNF-related protein 6 (CTRP6) links obesity to adipose tissue inflammation and insulin resistance,” J Biol Chem. jbc.M116.766808. PMID: 28726640
Lee, J., Choi, J., Selen Alpergin, ES., Zhao, L., Hartung, T., Scafidi, S., Riddle, RC., Wolfgang, MJ., 2017, “Loss of Hepatic Mitochondrial Long-Chain Fatty Acid Oxidation Confers Resistance to Diet-Induced Obesity and Glucose Intolerance,” Cell Rep. 20(3):655-667. PMID: 28723568 PubMed
Zhang, YV., Aikin, TJ., Li, Z., and  Montell, C., 2016, “The Basis of Food Texture Sensation in Drosophila,” Neuron. 91(4):863-77. PMCID: PMC4990472 [Available on 2017-08-17] PubMed
Sanders, S., Vierling, RJ., Bartee, D., DeColli, AA., Harrison, MJ., Aklinski, JL., Koppisch, AT. and Freel Meyers, CL., 2017, “Challenges and Hallmarks of Establishing Alkylacetylphosphonates as Probes of Bacterial 1-Deoxy-d-xylulose 5-Phosphate Synthase,” ACS Infect Dis. PMID: 28636325 PubMed
Schuller, AP., and Green, R., 2017, “The ABC(E1)s of Ribosome Recycling and Reinitiation,” Mol Cell. 66(5):578-580. PMID: 28575655 PubMed
Mitchell, CJ., Kim, MS., Na, CH. and Pandey, A., 2017, “PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data,” Mol Cell Proteomics. 15(8):2829-38. PMCID: PMC4974355  PubMed
Welsbie, DS., Mitchell, KL., Jaskula-Ranga, V., Sluch, VM., Yang, Z., Kim, J., Buehler, E., Patel, A., Martin, SE., Zhang, PW., Ge, Y., Duan, Y., Fuller, J., Kim, BJ., Hamed, E., Chamling, X., Lei, L., Fraser, IDC., Ronai, ZA., Berlinicke, CA. and Zack, DJ., 2017, “Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons,” Neuron. 94(6):1142-1154.e6. PMID: 28641113 PubMed
Ogunbona, OB*., Onguka, O.*, Calzada, E.*, Claypool, SM., 2017, “Multitiered and cooperative surveillance of mitochondrial Phosphatidylserine Decarboxylase 1.,”  Mol Cell Biol. pii: MCB.00049-17. *equal contribution  PubMed
Vasavda, C., Zaccor, NW., Scherer, PC., Sumner, CJ. and Snyder, SH., 2017, 2017, “Measuring G-protein-coupled Receptor Signaling via Radio-labeled GTP Binding,” mJ Vis Exp. 2017 Jun 9;(124). PMID: 28654029 PubMed
McClary, B., Zinshteyn, B., Meyer, M., Jouanneau, M., Pellegrino, S., Yusupova, G., Schuller, A., Reyes, JCP., Lu, J., Guo, Z., Ayinde, S., Luo, C., Dang, Y., Romo, D., Yusupov, M., Green, R., and Liu, JO., 2017, “Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A,” Cell Chem Biol. 24(5):605-613.e5. PMID: 28457705  PubMed  
Sundararajan K, and Goley ED, 2017, “Cytoskeletal Proteins in Caulobacter crescentus: Spatial Orchestrators of Cell Cycle Progression, Development, and Cell Shape,” Subcell Biochem. 84:103-137. PMID: 28500524 PubMed
Jernberg, JN., Bowman, CE., Wolfgang, MJ., and Scafidi, SJ., 2017, “Developmental regulation and localization of Carnitine Palmitoyltransferases (CPTs) in rat brain,” Neurochem. PMID: 28512781 PubMed
Ramachandran, K. and Margolis SS., 2017, “A mammalian nervous-system-specific plasma membrane proteasome complex that modulates neuronal function,” Nat Struct Mol Biol. PMCID: PMC5383508   PubMed
Walker-Sperling, VE., Pohlmeyer, CW., Veenhuis, RT., May, M., Luna, KA., Kirkpatrick, AR., Laeyendecker, O., Cox, AL., Carrington, M., Bailey, JR., Arduino, RC., and Blankson, JN., 2017, “Factors Associated With the Control of Viral Replication and Virologic Breakthrough in a Recently Infected HIV-1 Controller,” EBioMedicine. 16:141-149. PMID: 28159573 PubMed
Sell, GL., Schaffer, TB., and Margolis, SS., 2017 “Reducing expression of synapse-restricting protein Ephexin5 ameliorates Alzheimer's-like impairment in mice,” J Clin Invest. pii: 85504. PMCID: PMC5409082 PubMed
El-Diwany, R., Breitwieser, FP., Soliman, M., Skaist, AM., Srikrishna, G., Blankson, JN., Ray, SC., Wheelan, SJ., Thomas, DL., and Balagopal, A., 2017, “Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals,”  AIDS. PMID: 28358734 PubMed
Mirsafian, H., Manda, SS., Mitchell, CJ., Sreenivasamurthy, S., Ripen, AM., Mohamad, SB., Merican, AF., Pandey, A., 2016, “Long non-coding RNA expression in primary human monocytes,” Genomics. 108(1):37-45. PMID: 26778813 PubMed
Wu, Y., Li, BZ., Zhao, M., Mitchell, LA., Xie, ZX., Lin, QH., Wang, X., Xiao, WH., Wang, Y., Zhou, X., Liu, H., Li, X., Ding, MZ., Liu, D., Zhang, L., Liu, BL., Wu, XL., Li, FF., Dong, XT., Jia, B., Zhang, WZ., Jiang, GZ., Liu, Y., Bai, X., Song, TQ., Chen, Y., Zhou, SJ., Zhu, RY., Gao, F., Kuang, Z., Wang, X., Shen, M., Yang, K., Stracquadanio, G., Richardson, SM., Lin, Y., Wang, L., Walker, R., Luo, Y., Ma, PS., Yang, H., Cai, Y., Dai, J., Bader, JS., Boeke, JD., and Yuan, YJ., 2017 “Bug mapping and fitness testing of chemically synthesized chromosome X,” Science. 355(6329). pii: eaaf4706. PMID: 28280152 PubMed
Mitchell, LA., Wang, A., Stracquadanio, G., Kuang, Z., Wang, X., Yang, K., Richardson, S., Martin, JA., Zhao, Y., Walker, R., Luo, Y., Dai, H., Dong, K., Tang, Z., Yang, Y., Cai, Y., Heguy, A., Ueberheide, B., Fenyö, D., Dai, J., Bader, JS., and Boeke, JD., 2017, “Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond,” Science. 355(6329). pii: eaaf4831. PMID: 28280154 PubMed
Cox, E., Hwang, W., Uzoma, I., Hu, J., Guzzo, C., Jeong, J., Matunis, M., Qian, J., Zhu, H., and Blackshaw, S., 2017, “Global analysis of SUMO-binding proteins identifies SUMOylation as a key regulator of the INO80 chromatin remodeling complex,” Mol Cell Proteomics. pii: mcp.M116.063719. PMCID: PMC5417823 PubMed
Lu, YW., Acoba, MG., Selvaraju, K., Huang, TC., Nirujogi, RS., Sathe, G., Pandey, A.,and Claypool, SM., 2017, “Human adenine nucleotide translocases physically and functionally interact with respirasomes,” Mol Biol Cell. pii: mbc.E17-03-0195. PubMed
Goodrich, AC., Meyers, DJ. and Frueh, DP., 2-17, “Molecular Impact of Covalent Modifications on Nonribosomal Peptide Synthetase Carrier Protein Communication,” J Biol Chem. 2017 Apr 28. pii: jbc.M116.766220.PMID: 28455448 PubMed
Kuzmichev, YV., Veenhuis, RT., Pohlmeyer, CW., Garliss, CC., Walker-Sperling, VE. and Blankson, JN., 2017, “A CD3/CD28 microbead-based HIV-1 viral outgrowth assay,” J Virus Erad. 3(2):85-89. PMCID: PMC4601916  PubMed
Radley, AH., Schwab, RM., Tan, Y., Kim, J., Lo, EKW., Cahan, P.,2017, “Assessment of engineered cells using CellNet and RNA-seq,” Nat Protoc. 12(5):1089-1102. PMID: 28448485 PubMed
Bowman, CE., Rodriguez, S., Selen Alpergin, ES., Acoba, MG., Zhao, L., Hartung, T., Claypool, SM., Watkins, PA., and Wolfgang, MJ., 2017, “The Mammalian Malonyl-CoA Synthetase ACSF3 Is Required for Mitochondrial Protein Malonylation and Metabolic Efficiency,” Cell Chem Biol. pii: S2451-9456(17)30109-5. PMCID: PMC5482780 PubMed
Schuller, A.P.*, Wu, C.C.*, Dever, T.E., Buskirk, A.R. & Green, R. eIF5A functions globally in translation elongation and termination. Molecular Cell 66, 194–205. PMCID: PMC5414311  PubMed
Ruan, L., Zhou, C., Jin, E., Kucharavy, A., Zhang, Y., Wen, Z., Florens, L., Li, R., 2017, “Cytosolic proteostasis through importing of misfolded proteins into mitochondria,” Nature. PubMed​​
Cairns, L., Tran, T. and Kavran, JM., 2017, “Structural Insights into the Regulation of Hippo Signaling,” ACS Chem Biol. PubMed
Lambrus, BG. and Holland, AJ., 2017, “A New Mode of Mitotic Surveillance,” Trends Cell Biol. pii: S0962-8924(17)30014-4. PubMed
Petersen, PS., Lei, X., Wolf, RM., Rodriguez, S., Tan, SY., Little, HC., Schweitzer, MA., Magnuson, TH., Steele, KE. and Wong, GW., 2017, “CTRP7 deletion attenuates obesity-linked glucose intolerance, adipose tissue inflammation, and hepatic stress,” Am J Physiol Endocrinol Metab. ajpendo.00344.2016. PubMed
Walker-Sperling, VE., Pohlmeyer, CW., Tarwater, PM., Blankson, JN., 2016, “The Effect of Latency Reversal Agents on Primary CD8+ T Cells: Implications for Shock and Kill Strategies for Human Immunodeficiency Virus Eradication,” EBioMedicine. 8:217-29. PubMed
Walker-Sperling, VE., Pohlmeyer, CW., Veenhuis, RT., May, M., Luna, KA., Kirkpatrick, AR., Laeyendecker, O., Cox, AL., Carrington, M., Bailey, JR., Arduino, RC. and Blankson, JN., “Factors Associated With the Control of Viral Replication and Virologic Breakthrough in a Recently Infected HIV-1 Controller,” EBioMedicine. pii: S2352-3964(17)30038-5. PMCID: PMC4919475 ​ PubMed
Bettridge, J., Na, CH., Pandey, A. and Desiderio, S., 2017, “H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase,” Proc Natl Acad Sci U S A. 114(8):1904-1909. PubMed
Burr, R., Stewart, EV. and Espenshade, PJ., 2017, “Coordinate Regulation of Yeast Sterol Regulatory Element-Binding Protein (SREBP) and Mga2 Transcription Factors," J Biol Chem. 2017 Feb 15. pii: jbc.M117.778209. PubMed
Mills, EW., Green, R. and Ingolia, NT., 2017, “Slowed decay of mRNAs enhances platelet specific translation,” Blood. pii: blood-2016-08-736108. PubMed
Gonzalez-Hurtado, E., Lee, J., Choi, J., Selen Alpergin, ES., Collins, SL., Horton, MR. and Wolfgang, MJ., 2017, “The Loss Of Macrophage Fatty Acid Oxidation Does Not Potentiate Systemic Metabolic Dysfunction," Am J Physiol Endocrinol Metab :ajpendo.00408.2016. PubMed
El-Diwany, R., Cohen, VJ., Mankowski, MC., Wasilewski, LN., Brady, JK., Snider, AE., Osburn, WO., Murrell, B., Ray, SC., Bailey, JR., 2017, “Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1,” PLoS Pathog. 13(2):e1006235. PubMed
Li, Z., Tseng, PY., Tiwari, V., Xu, Q., He, SQ., Wang, Y., Zheng, Q., Han, L., Wu, Z., Blobaum, AL., Cui, Y., Tiwari, V., Sun, S., Cheng, Y., Huang-Lionnet, JH., Geng, Y., Xiao, B., Peng, J., Hopkins, C., Raja, SN., Guan, Y. and Dong, X., 2017, “Targeting human Mas-related G protein-coupled receptor X1 to inhibit persistent pain,” Proc Natl Acad Sci U S A. pii: 201615255.PubMed
Bachas, S., Kohrs, B. and Wade, HV.,2017, "Unconventional coupling between ligand recognition and allosteric control in the multidrug resistance gene regulator, BmrR," ChemMedChem. PubMed​
Phua, SC., Chiba, S., Suzuki, M., Su, E., Roberson, EC., Pusapati, GV., Setou, M., Rohatgi, R., Reiter, JF., Ikegami, K. and Inoue, T., 2017, "Dynamic Remodeling of Membrane Composition Drives Cell Cycle through Primary Cilia Excision," Cell. 168(1-2):264-279.e15. PMID: 28086093​ PubMed
Levine, MS., Bakker, B., Boeckx, B., Moyett, J., Lu, J., Vitre, B., Spierings, DC., Lansdorp, PM., Cleveland, DW., Lambrechts, D., Foijer, F. and Holland, AJ., 2017, “Centrosome Amplification Is Sufficient to Promote Spontaneous Tumorigenesis in Mammals,” Dev Cell. pii: S1534-5807(16)30917-0. PMCID: PMC5296221 PubMed
Schiffhauer, ES. and Robinson, DN., 2017, “Mechanochemical Signaling Directs Cell-Shape Change,”  Biophys J. 112(2):207-214. Review. PMCID: PMC5266144 PubMed
Peng, YJ., Zhang, X., Gridina, A., Chupikova, I., McCormick, DL., Thomas, RJ., Scammell, TE., Kim, G., Vasavda, C., Nanduri, J., Kumar, GK., Semenza, GL., Snyder, SH. and Prabhakar, NR., 2017, “Complementary roles of gasotransmitters CO and H2S in sleep apnea,” Proc Natl Acad Sci U S A. pii: 201620717. PMCID: PMC5307452 PubMed
Kumar, P., Tan., Y. and Cahan, P., 2017, “Understanding development and stem cells using single cell-based analyses of gene expression,” Development. 144(1):17-32. PMID: 28049689 PubMed
Campbell, DP., Chrysostomou, E. and Doetzlhofer, A., 2016, “Canonical Notch signaling plays an instructive role in auditory supporting cell development,” Sci Rep. 6:19484. PMCID: PMC472625 PubMed
Cai, D., Dai, W., Prasad, M., Luo, J., Gov, NS. and Montell, DJ., 2016, “Modeling and analysis of collective cell migration in an in vivo three-dimensional environment,” Proc Natl Acad Sci U S A. 113(15):E2134-41. PMCID: PMC4839456  PubMed
Prasad, TS., Mohanty, AK., Kumar, M., Sreenivasamurthy, SK., Dey, G., Nirujogi, RS., Pinto, SM., Madugundu, AK., Patil, AH., Advani, J., Manda, SS., Gupta, MK., Dwivedi, SB., Kelkar, DS., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, SD., Solanki, HS., Raja, R., Sathe, GJ., Chavan, S., Verma, R., Patel, KM., Jain, AP., Syed, N., Datta, KK., Khan, AA., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, CJ., Na, CH., Kumar, N., Sinnis, P., Sharakhov, IV., Wang, C., Gowda, H., Tu, Z., Kumar, A. and Pandey, A., 2016, “Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes,” Genome Res. 27(1):133-144. PMCID: PMC5204337 PubMed
Burr, R., Stewart, EV., Shao, W., Zhao, S., Hannibal-Bach, HK., Ejsing, CS. and Espenshade, PJ., 2016, “Mga2 Transcription Factor Regulates an Oxygen-responsive Lipid Homeostasis Pathway in Fission Yeast,” J Biol Chem. 291(23):12171-83. PMCID: PMC4933267 PubMed
Lee, J., Choi, J., Aja, S., Scafidi, S. and Wolfgang, MJ., 2016, “Loss of Adipose Fatty Acid Oxidation Does Not Potentiate Obesity at Thermoneutrality,” Cell Rep. 14(6):1308-16. PMCID: PMC4758873 PubMed
Smith, J., Calidas, D., Schmidt, H., Lu, T., Rasoloson, D. and Seydoux, G., 2016, “Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3,” Elife. 5. pii: e21337. PMCID:PMC5262379  PubMed

Pages