Recent Publications

2018

Buss, J., Coltharp, C., Huang, T., Pohlmeyer, C., Wang, SC., Hatem, C. and Xiao, J., 2013, "In vivo organization of the FtsZ-ring by ZapA and ZapB revealed by quantitative super-resolution microscopy," Mol Microbiol. 89(6):1099-120. PMCID: PMC3894617  PubMed
Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M. and Bettencourt-Dias, M., 2016, “CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,”  Curr Biol. 26(9):1127-37. PMCID: PMC4867225 PubMed
Adivarahan, S., Livingston, N., Nicholson, B., Rahman, S., Wu, B., Rissland, OS. and Zenklusen, D., 2018, “Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway,”Mol Cell. 72(4):727-738.e5. PMID: 30415950 PubMed
Wang, Y., Cho, C., Williams, J., Smallwood, PM., Zhang, C., Junge, HJ. and Nathans, J., 2018, “Interplay of the Norrin and Wnt7a/Wnt7b signaling systems in blood-brain barrier and blood-retina barrier development and maintenance,” Proc Natl Acad Sci U S A.pii: 201813217.  PMID: 30478038 PubMed
Wied, TJ., Chin, AC. and Lau, AY., 2018, “High Conformational Variability in the GluK2 Kainate Receptor Ligand-Binding Domain,” Structure. 2018 Oct 5. pii: S0969-2126(18)30334-4. PMID: 30482727 PubMed
Schaffer, TB., Smith, JE., Cook, EK., Phan, T. and Margolis, SS., 2018, “PKCε Inhibits Neuronal Dendritic Spine Development through Dual Phosphorylation of Ephexin5,” Cell Rep. 25(9):2470-2483.e8. PMID: 30485813 PubMed
Bedsaul, JR., Carter, NM., Deibel, KE., Hutcherson, SM., Jones, TA., Wang, Z., Yang, C., Yang, YK. and Pomerantz, JL., 2018, “Mechanisms of Regulated and Dysregulated CARD11 Signaling in Adaptive Immunity and Disease,” Front Immunol. 9:2105. eCollection 2018. Review. PMCID: PMC6156143 PubMed
Zhu, L., Kandasamy, SK., Liao, SE. and Fukunaga, R., 2018, “LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes,” Nat Commun. 9(1):4031. PMCID: PMC6168497 PubMed   
Schmidt, K., Ralle, M., Schaffer, T., Jayakanthan, S., Bari, B., Muchenditsi, A. and Lutsenko, S., 2018, “ATP7A and ATP7B copper transporters have distinct functions in the regulation of neuronal DOPAMINE-β-HYDROXYLASE,” J Biol Chem. pii: jbc.RA118.004889. PMID: 30341172 PubMed
Prasad, S., Huang, J., Zeng, Q., Brooks, BR., 2018, An explicit-solvent hybrid QM and MM approach for predicting pKa of smallmolecules in SAMPL6 challenge, J Comput Aided Mol Des. 32(10):1191-1201, PMID: 30276503. PubMed  
Braun, E., Gilmer, J., Mayes, H., Mobley, D., Monroe, J., Samarjeet, S.P., Zuckerman, D., 2018, Best Practices for Foundations in Molecular Simulations 
Zhu, J., Tsai, HJ., Gordon, MR., Li, R., 2018, “Cellular Stress Associated with Aneuploidy,” Dev Cell. 44(4):420-431. PMID: 29486194 PubMed  
Wu, M., Hayward, D., Kalin, JH., Song, Y., Schwabe, JW., Cole, PA., 2018, “Lysine-14 acetylation of histone H3 in chromatin confers resistance to the deacetylase and demethylase activities of an epigenetic silencing complex,” Elife. 7. pii: e37231. PMCID: PMC6019071 PubMed
Salvatierra, J., Castro, J., Erickson, A., Li, Q., Braz, J., Gilchrist, J., Grundy, L., Rychkov, GY., Deiteren, A., Rais, R., King, GF., Slusher, BS., Basbaum, A., Pasricha, PJ., Brierley, SM. and Bosmans, F., 2018, “NaV1.1 inhibition can reduce visceral hypersensitivity,” JCI Insight. 3(11). pii: 121000. PMCID: PMC6124407 PubMed
 Liao, SE. and Fukunaga, R., 2018, “Kinetic Analysis of Small Silencing RNA Production by Human and Drosophila Dicer Enzymes In Vitro,” Methods Mol Biol. 1680:101-121. PMID: 29030844 PubMed
Levine, MS. and Holland, AJ., 2018, “The impact of mitotic errors on cell proliferation and tumorigenesis,” Genes Dev.;32(9-10):620-638. PMCID: PMC6004076 [Available on 2018-11-01] PubMed
Duan, R., Kim, JH., Shilagardi, K., Schiffhauer, ES., Lee, DM., Son, S., Li, S., Thomas, C., Luo, T., Fletcher, DA., Robinson, DN. and Chen, EH., 2018, “Spectrin is a mechanoresponsive protein shaping fusogenic synapse architecture during myoblast fusion,” Nat Cell Biol. 20(6):688-698. PMID: 29802406 PubMed
Lambrus, BG., Moyer, TC. and Holland, AJ., 2018, “Applying the auxin-inducible degradation system for rapid protein depletion in mammalian cells,” Methods Cell Biol. 144:107-135. 5. PMID: 29804665 PubMed
Sanders, S., Bartee, D., Harrison, MJ., Phillips, PD., Koppisch, AT. and Freel Meyers, CL., 2018, “Growth medium-dependent antimicrobial activity of early stage MEP pathway inhibitors,” PLoS One. 13(5):e0197638. PMCID: PMC5957436 PubMed
Schuller, AP. and Green, R., 2018, “Roadblocks and resolutions in eukaryotic translation,” Nat Rev Mol Cell Biol. PMCID: PMC6054806 [Available on 2019-02-01] PubMed  
Neumann, NM., Perrone, MC., Veldhuis, JH., Huebner, RJ., Zhan, H., Devreotes, PN., Brodland, GW., and Ewald, AJ., 2018, “Coordination of Receptor Tyrosine Kinase Signaling and Interfacial Tension Dynamics Drives Radial Intercalation and Tube Elongation,” Dev Cell. 45(1):67-82.e6. PMCID: PMC5983037 [Available on 2019-04-09] PubMed
Little, H., Tan, SY., Cali, F., Rodriguez, S., Lei, X., Wolfe, A., Hug, C. and Wong, GW., 2018, “Multiplex quantification identifies novel exercise-regulated myokines/cytokines in plasma and in glycolytic and oxidative skeletal muscle,” Mol Cell Proteomics. pii: mcp.RA118.000794. PMCID: PMC6072542 [Available on 2019-08-01] PubMed
Lilley, BN., Sabbah, S., Hunyara, JL., Gribble, KD., Al-Khindi, T., Xiong, J., Wu, Z., Berson, DM., Kolodkin, AL., 2018, “Genetic access to neurons in the accessory optic system reveals a role for Sema6A in midbrain circuitry mediating motion perception,” J Comp Neurol. PubMed
Liao, SE., Ai, Y. and Fukunaga, R., 2018, “An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in <i>Drosophila</i> testes,” Heliyon. 2018 Jul 25;4(7):e00706. eCollection. PMCID: PMC6074722 PubMed
Ramachandran, KV., Fu, JM., Schaffer, TB., Na, CH., Delannoy, M. and Margolis, SS., 2018, “Activity-Dependent Degradation of the Nascentome by the Neuronal Membrane Proteasome,” Mol Cell. 71(1):169-177.e6. PMCID: PMC6070390 [Available on 2019-07-05] PubMed
Sundararajan, K., Vecchiarelli, A., Mizuuchi, K. and Goley, ED., 2018, “Species- and C-terminal linker-dependent variations in the dynamic behavior of FtsZ on membranes in vitro,” Mol Microbiol. PMID: 30010220 PubMed
Divakaruni, AS., Hsieh, WY., Minarrieta, L., Duong, TN., Kim, KKO., Desousa, BR., Andreyev, AY., Bowman, CE., Caradonna, K., Dranka, BP., Ferrick, DA., Liesa, M., Stiles, L., Rogers, GW., Braas, D., Ciaraldi, TP., Wolfgang, MJ., Sparwasser, T., Berod, L., Bensinger, SJ. and Murphy, AN., 2018, “Etomoxir Inhibits Macrophage Polarization by Disrupting CoA Homeostasis,” Cell Metab. 2018 Jun 16. pii: S1550-4131(18)30383-8.  PMCID: PMC6125190 [Available on 2019-09-04] PubMed
Sirka, OK., Shamir, ER. and Ewald, AJ., 2018, “Myoepithelial cells are a dynamic barrier to epithelial dissemination,”  J Cell Biol. 2018 Jul 30. pii: jcb.201802144. PMCID: PMC6168248 (available 2019-04-01)  Pubmed
Zhou, Y., Bond, A.m., Shade, J.e., Zhu, Y., Davis, C.-h.O., Wang, X., Yoon, K.-j., Su, Y., Phan, A.t., Chen, W.j., Oh, J.h., Marsh-Armstrong, N., Atabai, K., Ming, G.-l., and Song, H. 2018, "Autocrine Mfge8 Signaling Prevents Developmental Exhaustion of the Adult Neural Stem Cell Pool," Cell Stem Cell, 23(3), 444-452 PMCID: PMC6128767 (available on 2019-09-06) PubMed
Cairns, L., Tran, T., Fowl, BH., Patterson, A., Kim, YJ., Bothner, B. and Kavran, JM., 2018, “Salvador has an extended SARAH domain that mediates binding to Hippo kinase,” J Biol Chem. pii: jbc.RA117.000923. PMCID: PMC5900767 PubMed
Oldach, LM., Gorshkov, K., Mills, WT. 4th,  Zhang, J. and Meffert, MK., 2018, “A Biosensor for MAPK-Dependent Lin28 Signaling,” Mol Biol Cell. pii: mbc.E17-08-0500. PMCID: PMC5935066 PubMed
Yoon, KJ., Vissers, C., Ming, GL. and Song, H., 2018, “Epigenetics and epitranscriptomics in temporal patterning of cortical neural progenitor competence,” J Cell Biol. pii: jcb.201802117. Review. PMCID: PMC5987727 PubMed
Kalin, JH., Wu, M., Gomez, AV., Song, Y., Das, J., Hayward, D., Adejola, N., Wu, M., Panova, I., Chung, HJ., Kim, E., Roberts, HJ., Roberts, JM., Prusevich, P., Jeliazkov, JR., Roy Burman, SS., Fairall, L., Milano, C., Eroglu, A., Proby, CM., Dinkova-Kostova, AT., Hancock, WW., Gray, JJ., Bradner, JE., Valente, S., Mai, A., Anders, NM., Rudek, MA., Hu, Y., Ryu, B., Schwabe, JWR., Mattevi, A., Alani, RM. and Cole, PA., 2018, “Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors,” Nat Commun. 9(1):53. PMCID: PMC5754352 PubMed
Wang, S., Shi, X., Wei, S., Ma, D., Ajala, O., Lv, SQ., Ying, M., Zhang, YA., Claypool, SM., Watkins, P. and Xia, S., 2018, “Krüppel-like factor 4 (KLF4) induces mitochondrial fusion and increases spare respiratory capacity of human glioblastoma cells,” J Biol Chem. pii: jbc.RA117.001323. PMCID: PMC5925822 PubMed
West-Foyle, H., Kothari, P., Osborne, J. and Robinson, DN., 2018, “14-3-3 proteins tune non-muscle myosin II assembly,” J Biol Chem. pii: jbc.M117.819391. PMCID: PMC5936829 PubMed
Ruan, L., Zhang, X. and Li, R., 2018, “Recent insights into the cellular and molecular determinants of aging,” J Cell Sci. 131(3). pii: jcs210831. Review. PMCID: PMC5826050 PubMed
Islam, N. and Garza, LA., 2018, “Adipose and Hair Function: An aPPARent Connection,” J Invest Dermatol. 138(3):480-482. PMID: 29477189 PubMed
Gilbert, CE., Sztul, E., Machamer, CE., 2018, “Commonly used trafficking blocks disrupt ARF1 activation and the localization and function of specific Golgi proteins,” Mol Biol Cell. pii: mbc.E17-11-0622. PMCID: PMC5896932 [Available on 2018-06-30] PubMed
Uzoma, I., Hu, J., Cox, E., Xia, S., Zhou, J., Rho, HS., Guzzo, C., Paul, C., Ajala, O., Goodwin, CR., Jeong, J., Moore, C., Zhang, H., Meluh, P., Blackshaw, S., Matunis, M., Qian, J., Zhu, H., 2018, “Global Identification of SUMO Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration,” Mol Cell Proteomics. pii: mcp.RA117.000014. PMCID: PMC5930406 Pubmed

2017

Yourik, P., Aitken, CE., Zhou, F., Gupta, N., Hinnebusch, AG. and Lorsch, JR., 2017, “Yeast eIF4A enhances recruitment of mRNAs regardless of their structural complexity,” Elife. 6. pii: e31476. PMCID: PMC5726853 PubMed
Vissers, C., Ming, GL. and Song, H., 2017, “Stem cells take the stairs,” J Biol Chem. 292(48):19605-19606. PMCID: PMC5712602 PubMed
Scherer, PC., Zaccor, NW., Neumann, NM., Vasavda, C., Barrow, R., Ewald, AJ., Rao, F., Sumner, CJ. and Snyder, SH., 2017, “TRPV1 is a physiological regulator of μ-opioid receptors,”  Proc Natl Acad Sci U S A. 114(51):13561-13566. PMCID: PMC5754810  PubMed
Schuller, AP., Zinshteyn, B., Enam, SU. and Green, R., 2017, “Directed hydroxyl radical probing reveals Upf1 binding to the 80S ribosomal E site rRNA at the L1 stalk,” Nucleic Acids Res. PMCID: PMC5829565 PubMed
Kim, DI., Cutler, JA., Na, CH., Reckel, S., Renuse, S., Madugundu, AK., Tahir, R., Goldschmidt, HL., Reddy, KL., Huganir, RL., Wu, X., Zachara, NE., Hantschel, O. and Pandey, A., 2017, “BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation,” J Proteome Res. PMCID: PMC6092923 PubMed
Lee, CS., Lu, T. and Seydoux, G., 2017, “Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B,” Elife. 6. pii: e30201. PMCID: PMC5734877 PubMed
Sundararajan, K. and Goley, ED., 2017 Oct., "The intrinsically disordered C-terminal linker of FtsZ regulates protofilament dynamics and superstructure <i>in vitro</i>.," J Biol Chem. pii: jbc.M117.809939. PMCID: 5733589 (available on 2018-12-15)  PubMed
Levine, M. and Holland, A., 2017, “Cell cycle proteins moonlight in multiciliogenesis,” Science. 358(6364):716-718. No abstract available. PMCID: PMC5749915 PubMed
Lariviere, PJ., Szwedziak, P., Mahone, CR., Löwe, J. and Goley, ED., 2017, “FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate during Caulobacter division,” Mol Microbiol. PMCID: PMC5760450 PubMed
Surcel, A., Schiffhauer, E.S., Thomas, D., Zhu, Q., DiNapoli, K., Herbig, M., Otto, O., Guck, J. Jaffee, E., Iglesias, P., Anders, R. and Robinson, D., 2017, "Harnessing the adaptive potential of mechanoresponsive proteins to overwhelm pancreatic cancer dissemination and invasion," bioRxiv. 
Burr, R., Ribbens, D., Raychaudhuri, S., Stewart, EV., Ho, J. and Espenshade, PJ., 2017, “Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast,” J Biol Chem. 292(39):16333-16350. PMCID: PMC5625062 PubMed

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