Recent Publications

2018

Cairns, L., Tran, T., Fowl, BH., Patterson, A., Kim, YJ., Bothner, B. and Kavran, JM., 2018, “Salvador has an extended SARAH domain that mediates binding to Hippo kinase,” J Biol Chem. pii: jbc.RA117.000923. PMID: 29519817 PubMed
Oldach, LM., Gorshkov, K., Mills, WT. 4th,  Zhang, J. and Meffert, MK., 2018, “A Biosensor for MAPK-Dependent Lin28 Signaling,” Mol Biol Cell. pii: mbc.E17-08-0500. PMCID: PMC5935066 PubMed
Dadi, H., Jones, TA., Merico, D., Sharfe, N., Ovadia, A., Schejter, Y., Reid, B., Sun, M., Vong, L., Atkinson, A., Lavi, S., Pomerantz, JL. and Roifman, CM., 2018, “Combined immunodeficiency and atopy caused by a dominant negative mutation in caspase activation and recruitment domain family member 11 (CARD11),” J Allergy Clin Immunol. 141(5):1818-1830.e2. PMID: 28826773 PubMed  
Yoon, KJ., Vissers, C., Ming, GL. and Song, H., 2018, “Epigenetics and epitranscriptomics in temporal patterning of cortical neural progenitor competence,” J Cell Biol. pii: jcb.201802117. Review. PMID: 29666150 PubMed
Kalin, JH., Wu, M., Gomez, AV., Song, Y., Das, J., Hayward, D., Adejola, N., Wu, M., Panova, I., Chung, HJ., Kim, E., Roberts, HJ., Roberts, JM., Prusevich, P., Jeliazkov, JR., Roy Burman, SS., Fairall, L., Milano, C., Eroglu, A., Proby, CM., Dinkova-Kostova, AT., Hancock, WW., Gray, JJ., Bradner, JE., Valente, S., Mai, A., Anders, NM., Rudek, MA., Hu, Y., Ryu, B., Schwabe, JWR., Mattevi, A., Alani, RM. and Cole, PA., 2018, “Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors,” Nat Commun. 9(1):53. PMCID: PMC5754352 PubMed
Wang, S., Shi, X., Wei, S., Ma, D., Ajala, O., Lv, SQ., Ying, M., Zhang, YA., Claypool, SM., Watkins, P. and Xia, S., 2018, “Krüppel-like factor 4 (KLF4) induces mitochondrial fusion and increases spare respiratory capacity of human glioblastoma cells,” J Biol Chem. pii: jbc.RA117.001323. PMCID: PMC5925822 PubMed
West-Foyle, H., Kothari, P., Osborne, J. and Robinson, DN., 2018, “14-3-3 proteins tune non-muscle myosin II assembly,” J Biol Chem. pii: jbc.M117.819391. PMCID: PMC5936829 PubMed
Zhu, J., Tsai, HJ., Gordon, MR., and Li, R., 2018, “Cellular Stress Associated with Aneuploidy,” Dev Cell. 44(4):420-431. Review. PMID: 29486194 PubMed
Ruan, L., Zhang, X. and Li, R., 2018, “Recent insights into the cellular and molecular determinants of aging,” J Cell Sci. 131(3). pii: jcs210831. Review. PMCID: PMC5826050 PubMed
Islam, N. and Garza, LA., 2018, “Adipose and Hair Function: An aPPARent Connection,” J Invest Dermatol. 138(3):480-482. PMID: 29477189 PubMed
Gilbert, CE., Sztul, E., Machamer, CE., 2018, “Commonly used trafficking blocks disrupt ARF1 activation and the localization and function of specific Golgi proteins,” Mol Biol Cell. pii: mbc.E17-11-0622. PMCID: PMC5896932 [Available on 2018-06-30] PubMed
Uzoma, I., Hu, J., Cox, E., Xia, S., Zhou, J., Rho, HS., Guzzo, C., Paul, C., Ajala, O., Goodwin, CR., Jeong, J., Moore, C., Zhang, H., Meluh, P., Blackshaw, S., Matunis, M., Qian, J., Zhu, H., 2018, “Global Identification of SUMO Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration,” Mol Cell Proteomics. pii: mcp.RA117.000014. PMCID: PMC5930406 Pubmed

2017

Karimian, K., 2017, “Both male and female advisers can "mother",” Science. (6367):1141. No abstract available. PMID: 29191897 PubMed
Yourik, P., Aitken, CE., Zhou, F., Gupta, N., Hinnebusch, AG. and Lorsch, JR., 2017, “Yeast eIF4A enhances recruitment of mRNAs regardless of their structural complexity,” Elife. 6. pii: e31476. PMCID: PMC5726853 PubMed
Harkey, AF., Watkins, J., Olex, AL., DiNapoli, KT., Lewis, D., Binder, B., Fetrow, JS. and Muday, GK., 2017, “Identification of transcriptional and receptor networks that control root responses to ethylene,” Plant Physiol. pii: pp.00907.2017. PMCID: PMC5841720 PubMed
Vissers, C., Ming, GL. and Song, H., 2017, “Stem cells take the stairs,” J Biol Chem. 292(48):19605-19606. PMCID: PMC5712602 PubMed
Scherer, PC., Zaccor, NW., Neumann, NM., Vasavda, C., Barrow, R., Ewald, AJ., Rao, F., Sumner, CJ. and Snyder, SH., 2017, “TRPV1 is a physiological regulator of μ-opioid receptors,”  Proc Natl Acad Sci U S A. 114(51):13561-13566. PMCID: PMC5754810  PubMed
Schuller, AP., Zinshteyn, B., Enam, SU. and Green, R., 2017, “Directed hydroxyl radical probing reveals Upf1 binding to the 80S ribosomal E site rRNA at the L1 stalk,” Nucleic Acids Res. PMCID: PMC5829565 PubMed
Kim, DI., Cutler, JA., Na, CH., Reckel, S., Renuse, S., Madugundu, AK., Tahir, R., Goldschmidt, HL., Reddy, KL., Huganir, RL., Wu, X., Zachara, NE., Hantschel, O. and Pandey, A., 2017, “BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation,” J Proteome Res. PMID: 29249144 PubMed
Lee, CS., Lu, T. and Seydoux, G., 2017 Nov., “Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B,” Elife. 6. pii: e30201. PMID: 29111977 PubMed
Sundararajan, K. and Goley, ED., 2017 Oct., "The intrinsically disordered C-terminal linker of FtsZ regulates protofilament dynamics and superstructure <i>in vitro</i>.," J Biol Chem. pii: jbc.M117.809939. PMID: 29089389 PubMed
Levine, M. and Holland, A., 2017, “Cell cycle proteins moonlight in multiciliogenesis,” Science. 358(6364):716-718. No abstract available. PMID: 29123048 PubMed
Lariviere, PJ., Szwedziak, P., Mahone, CR., Löwe, J. and Goley, ED., 2017, “FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate during Caulobacter division,” Mol Microbiol. PMID: 29119622 PubMed
Surcel, A., Schiffhauer, E.S., Thomas, D., Zhu, Q., DiNapoli, K., Herbig, M., Otto, O., Guck, J. Jaffee, E., Iglesias, P., Anders, R. and Robinson, D., 2017, "Harnessing the adaptive potential of mechanoresponsive proteins to overwhelm pancreatic cancer dissemination and invasion," bioRxiv. 
Burr, R., Ribbens, D., Raychaudhuri, S., Stewart, EV., Ho, J. and Espenshade, PJ., 2017, “Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast,” J Biol Chem. 292(39):16333-16350. PMCID: PMC5625062 PubMed
Clasen, SJ., Shao, W., Gu, H. and Espenshade, P., 2017, “Prolyl dihydroxylation of pre-ribosomal uS12/Rps23 regulates fungal hypoxic adaptation,” Elife. 6. pii: e28563. PMCID: PMC5690285 PubMed  
Lee, JH., Wendorff, TJ. and Berger, JM., 2017, “Resveratrol: a novel type of topoisomerase II inhibitor,” J Biol Chem. pii: jbc.M117.810580. PMID: 29074616 PubMed
Phua, SC., Nihongaki, Y. and Inoue, T., 2018, “Autonomy declared by primary cilia through compartmentalization of membrane phosphoinositides,” Curr Opin Cell Biol.; 50:72-78. PMCID: PMC5911401 PubMed
Kuzmichev, YV., Veenhuis, RT., Pohlmeyer, CW., Garliss, CC., Walker- Sperling, VE., Blankson, JN., 2017, "A CD3/CD28 microbead-based HIV-1 viral outgrowth assay," J Virus Erad. 3(2):85-89. PMCID: PMC5384271. PubMed
Lee, CF., Lo, YC., Cheng, CH., Furtmüller, GJ., Oh, B., Andrade-Oliveira, V., Thomas, AG., Bowman, CE., Slusher, BS., Wolfgang, MJ., Brandacher, G., Powell, JD., 2015, "Preventing Allograft Rejection by Targeting Immune Metabolism," Cell Rep. 13(4):760- 70. PMCID: PMC4626381. PubMed
Walker-Sperling, VE., Pohlmeyer, CW., Veenhuis, RT., May, M., Luna, KA., Kirkpatrick, AR., Laeyendecker, O., Cox, AL., Carrington, M., Bailey, JR., Arduino, RC. and Blankson, JN., 2017, "Factors Associated With the Control of Viral Replication and Virologic Breakthrough in a Recently Infected HIV-1 Controller,"  EBioMedicine. 16:141-149. PMCID: PMC5474502 PubMed
Yoon, KJ., Ringeling, FR., Vissers, C., Jacob, F., Pokrass, M., Jimenez-Cyrus, D., Su, Y., Kim, NS., Zhu, Y., Zheng, L., Kim, S., Wang, X., Doré, LC., Jin, P., Regot, S., Zhuang, X., Canzar, S., He, C., Ming, GL. and Song, H., 2017, "Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation," Cell. 201pii: S0092-8674(17)31052-8 PubMed
Ogunbona, OB., Onguka, O., Calzada, E. and Claypool, SM., 2017, “Multitiered and Cooperative Surveillance of Mitochondrial Phosphatidylserine Decarboxylase 1,” Mol Cell Biol. 2017 37(17). pii: e00049-17. PMID: 28606933 PubMed 
Meier, EL., Daitch, AK., Yao, Q., Bhargava, A., Jensen, GJ. and Goley, ED., 2017, “FtsEX-mediated regulation of the final stages of cell division reveals morphogenetic plasticity in Caulobacter crescentus,” PLoS Genet. 13(9):e1006999. PMCID: PMC5607218 PubMed
Kim, SP., Li, Z., Zoch, ML., Frey, JL., Bowman, CE., Kushwaha, P., Ryan, KA., Goh, BC., Scafidi, S., Pickett, JE., Faugere, MC., Kershaw, EE., Thorek, DLJ., Clemens, TL., Wolfgang, MJ. and Riddle, RC., 2017, “Fatty acid oxidation by the osteoblast is required for normal bone acquisition in a sex- and diet-dependent manner,” JCI Insight. 2(16). pii: 92704. PMCID:PMC5621897 PubMed
Burr, R., Ribbens, D., Raychaudhuri, S., Stewart, EV., Ho, J. and Espenshade, PJ., 2017, “Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of Sterol Regulatory Element-binding Protein in fission yeast,” J Biol Chem. 2017 Aug 18. pii: jbc.M117.802025. PMID: 28821619 PubMed
Burr, R. and Espenshade, PJ., 2017, “Oxygen-responsive transcriptional regulation of lipid homeostasis in fungi: Implications for anti-fungal drug development,” Semin Cell Dev Biol. pii: S1084-9521(17)30201-X. PMID: 28851600 PubMed
Nguyen-Ngoc, KV., Silvestri, VL., Georgess, D., Fairchild, AN. and Ewald, AJ., “Mosaic loss of non-muscle myosin IIA and IIB is sufficient to induce mammary epithelial proliferation,” J Cell Sci. pii: jcs.208546. PMID: 28821574 PubMed
Miao, C., Schiffhauer, ES., Okeke, EI., Robinson, DN. and Luo, T., 2017, “Parallel Compression Is a Fast Low-Cost Assay for the High-Throughput Screening of Mechanosensory Cytoskeletal Proteins in Cells,” ACS Appl Mater Interfaces. 9(34):28168-28179. 21.PMID: 28795554 PubMed
 Cho, C., Smallwood, PM. and Nathans, J., 2017, “Reck and Gpr124 Are Essential Receptor Cofactors for Wnt7a/Wnt7b-Specific Signaling in Mammalian CNS Angiogenesis and Blood-Brain Barrier Regulation,” Neuron. 95(5):1056-1073.e5. PMID: 28803732 PubMed
Dadi, H., Jones, TA., Merico, D., Sharfe, N., Ovadia, A., Schejter, Y., Reid, B., Sun, M., Vong, L., Atkinson, A., Lavi, S., Pomerantz, JL. and Roifman, CM., “Combined immunodeficiency and atopy caused by a dominant negative mutation in CARD11,” J Allergy Clin Immunol. pii: S0091-6749(17)31281-2. PMID: 28826773 PubMed
Yoon, KJ., Song, G., Qian, X., Pan, J., Xu, D., Rho, HS., Kim, NS., Habela, C., Zheng, L., Jacob, F., Zhang, F., Lee, EM., Huang, WK., Ringeling, FR.,Vissers, C., Li, C., Yuan, L., Kang, K., Kim, S., Yeo, J., Cheng, Y., Liu, S., Wen, Z., Qin, CF., Wu, Q., Christian, KM., Tang, H., Jin, P., Xu, Z., Qian, J., Zhu, H., Song and H., Ming, GL., “Zika-Virus-Encoded NS2A Disrupts Mammalian Cortical Neurogenesis by Degrading Adherens Junction Proteins,” Cell Stem Cell. pii: S1934-5909(17)30293-X. PubMed
Lei, X., Seldin, MM., Little, HC., Choy, N., Klonisch, T., and Wong, GW., 2017, “C1q/TNF-related protein 6 (CTRP6) links obesity to adipose tissue inflammation and insulin resistance,” J Biol Chem. jbc.M116.766808. PMID: 28726640
Lee, J., Choi, J., Selen Alpergin, ES., Zhao, L., Hartung, T., Scafidi, S., Riddle, RC., Wolfgang, MJ., 2017, “Loss of Hepatic Mitochondrial Long-Chain Fatty Acid Oxidation Confers Resistance to Diet-Induced Obesity and Glucose Intolerance,” Cell Rep. 20(3):655-667. PMID: 28723568 PubMed
Sanders, S., Vierling, RJ., Bartee, D., DeColli, AA., Harrison, MJ., Aklinski, JL., Koppisch, AT. and Freel Meyers, CL., 2017, “Challenges and Hallmarks of Establishing Alkylacetylphosphonates as Probes of Bacterial 1-Deoxy-d-xylulose 5-Phosphate Synthase,” ACS Infect Dis. PMID: 28636325 PubMed
Schuller, AP., and Green, R., 2017, “The ABC(E1)s of Ribosome Recycling and Reinitiation,” Mol Cell. 66(5):578-580. PMID: 28575655 PubMed
Mitchell, CJ., Kim, MS., Na, CH. and Pandey, A., 2017, “PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data,” Mol Cell Proteomics. 15(8):2829-38. PMCID: PMC4974355  PubMed
Welsbie, DS., Mitchell, KL., Jaskula-Ranga, V., Sluch, VM., Yang, Z., Kim, J., Buehler, E., Patel, A., Martin, SE., Zhang, PW., Ge, Y., Duan, Y., Fuller, J., Kim, BJ., Hamed, E., Chamling, X., Lei, L., Fraser, IDC., Ronai, ZA., Berlinicke, CA. and Zack, DJ., 2017, “Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons,” Neuron. 94(6):1142-1154.e6. PMID: 28641113 PubMed
Ogunbona, OB*., Onguka, O.*, Calzada, E.*, Claypool, SM., 2017, “Multitiered and cooperative surveillance of mitochondrial Phosphatidylserine Decarboxylase 1.,”  Mol Cell Biol. pii: MCB.00049-17. *equal contribution  PubMed
Vasavda, C., Zaccor, NW., Scherer, PC., Sumner, CJ. and Snyder, SH., 2017, 2017, “Measuring G-protein-coupled Receptor Signaling via Radio-labeled GTP Binding,” mJ Vis Exp. 2017 Jun 9;(124). PMID: 28654029 PubMed

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