Recent Publications

2019

Dresselhaus EC, Meffert MK., 2019 May 9. "Cellular Specificity of NF-κB Function in the Nervous System." Front Immunol, 10:1043. doi: 10.3389/fimmu.2019.01043. eCollection 2019. Review. PMCID: PMC6520659. PubMed.
Weaver J, Mohammad F, Buskirk AR, Storz G, 2019 Mar 5. "Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes." MBio, 10(2). pii: e02819-18. doi: 10.1128/mBio.02819-18. PMCID: PMC6401488. PubMed.
Meixiong J, Vasavda C, Snyder SH, Dong X., 2019 May 21. "MRGPRX4 is a G protein-coupled receptor activated by bile acids that may contribute to cholestatic pruritus." Proc Natl Acad Sci USA, 116(21):10525-10530. doi: 10.1073/pnas.1903316116. PubMed.
DeFelice MM*, Clark HR*, Hughey JJ, Maayan I, Kudo T, Gutschow MV, Covert MW, Regot S., 2019 Apr 30. "NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop." Sci Signal. 12(579). pii: eaau3568. doi: 10.1126/scisignal.aau3568. *equal contribution. PubMed.
Moyer TC, Holland AJ., 2019 May 22. "PLK4 promotes centriole duplication by phosphorylating STIL to link the procentriole cartwheel to the microtubule wall." Elife, 8. pii: e46054. doi: 10.7554/eLife.46054. [Epub ahead of print]. PubMed.
Zhu L, Liao SE, Ai Y, Fukunaga R, 2019 May 30. "RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries.", PLoS One.14(5):e0217603. doi: 10.1371/journal.pone.0217603. eCollection 2019. PubMed.
Syu GD, Wang SC, Ma G, Liu S, Pearce D, Prakash A, Henson B, Weng LC, Ghosh D, Ramos P, Eichinger D, Pino I, Dong X, Xiao J, Wang S, Tao N, Kim KS, Desai PJ, Zhu H., 2019 Apr 30, "Development and application of a high-content virion display human GPCR array." Nat Commun.;10(1):1997. doi: 10.1038/s41467-019-09938-9. PMCID: PMC6491619  PubMed.
 
Bowman CE, Scafidi J, Scafidi S., 2019, ”Metabolic perturbations after pediatric TBI: It's not just about glucose”, Exp Neurol. Review. 316:74-84. PubMed  
Clister T, Greenwald EC, Baillie GS, Zhang J., 2019, “AKAP95 Organizes a Nuclear Microdomain to Control Local cAMP for Regulating Nuclear PKA”, Cell Chem Biol. pii: S2451-9456(19)30080-7. PubMed  
Bowman CE, Selen Alpergin ES, Ellis JM, Wolfgang MJ., 2019, “Loss of ACOT7 potentiates seizures and metabolic dysfunction”, Am J Physiol Endocrinol Metab. doi: 10.1152/ajpendo.00537.2018. PubMed  
Liao SE, Kandasamy SK, Zhu L, Fukunaga R., 2019, “DEAD-box RNA helicase Belle post-transcriptionally promotes gene expression in an ATPase activity-dependent manner”, RNA. pii: rna.070268.118. PubMed  
Little HC, Rodriguez S, Lei X, Tan SY, Stewart AN, Sahagun A, Sarver DC, Wong GW., 2019, “Myonectin deletion promotes adipose fat storage and reduces liver steatosis” FASEB J. fj201900520R. PubMed  
Lariviere PJ, Mahone CR, Santiago-Collazo G, Howell M, Daitch AK, Zeinert R, Chien P, Brown PJB, Goley ED., 2019, “An Essential Regulator of Bacterial Division Links FtsZ to Cell Wall Synthase Activation”, Curr Biol. pii: S0960-9822(19)30394-X. PubMed  
Patel SP, Vasavda C, Ho B, Meixiong J, Dong X, Kwatra SG., 2019, “Cholestatic pruritus: Emerging mechanisms and therapeutics”, J Am Acad Dermatol. pii: S0190-9622(19)30627-9. Review. PubMed  
Cook EK, Sell GL, Schaffer TB, Margolis SS., 2019, "The emergence of Ephexin5 as a therapeutic target in Alzheimer's disease." Expert Opin Ther Targets. 23(4):263-265. PubMed
Calzada, E.,Avery E, Sam PN, Modak A, Wang C, McCaffery JM, Han X, Alder NN, Claypool SM., 2019, "Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function." Nat Commun. 10(1):1432 PMCID: PMC6441012 PubMed
Putnam A, Cassani M, Smith J, Seydoux G. 2019, "A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos," Nat Struct Mol Biol. (3):220-226. PubMed  
Latallo MJ, Livingston NM, Wu B., 2019, "Translation imaging of single mRNAs in Established Cell Lines and Primary Cultured Neurons." Methods. pii: S1046-2023(18)30341-4. Review. PubMed  
Allen J, Hao S, Sears CL, Timp W., 2019, "Epigenetic changes induced by Bacteroides fragilis toxin (BFT)." Infect Immun. pii: IAI.00447-18. PubMed
Westerbeck JW, Machamer CE., 2019, "The Infectious Bronchitis Coronavirus Envelope Protein Alters Golgi pH to Protect Spike Protein and Promote Release of Infectious Virus." J Virol.  pii: JVI.00015-19. PubMed
Yue WWS*, Silverman D*, Ren X, Frederiksen R, Sakai K, Yamashita T, Shichida Y, Cornwall MC4, Chen J, Yau KW., 2019 "Elementary response triggered by transducin in retinal rods." Proc Natl Acad Sci U S A. 116(11):5144-5153 PMCID: PMC6421417 *equal contribution PubMed
Bartee D, Sanders S, Phillips PD, Harrison MJ, Koppisch AT, Freel Meyers CL., 2019, "Enamide Prodrugs of Acetyl Phosphonate Deoxy-d-xylulose-5-phosphate Synthase Inhibitors as Potent Antibacterial Agents." ACS Infect Dis. 5(3):406-417. PubMed  
Worden EJ, Hoffmann NA, Hicks CW, Wolberger C., 2019, "Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L." Cell. 176(6):1490-1501.e12.  PubMed
Schiffhauer, ES., Ren, Y., Iglesias, V., Kothari, P., Iglesias, PA. and Robinson, DN., 2019, "Myosin IIB assembly-state determines myosin IIB mechanosensitive dynamics," J. Cell Biol.218(3):895-908.. PubMed  
Allen J, Sears CL., 2019, "Impact of the gut microbiome on the genome and epigenome of colon epithelial cells: contributions to colorectal cancer development." Genome Med. 11(1):11. Review. PubMed
Vissers C, Ming GL, Song H., 2019, "Nanoparticle technology and stem cell therapy team up against neurodegenerative disorders." Adv Drug Deliv Rev. pii: S0169-409X(19)30023-7. PubMed
Tao Y, Kang B, Petkovich DA, Bhandari YR, In J, Stein-O'Brien G, Kong X, Xie W, Zachos N, Maegawa S, Vaidya H, Brown S, Chiu Yen RW, Shao X, Thakor J, Lu Z, Cai Y, Zhang Y, Mallona I, Peinado MA, Zahnow CA, Ahuja N, Fertig E, Issa JP, Baylin SB, Easwaran H., 2019, "Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and BrafV600E-Induced Tumorigenesis." Cancer Cell. 35(2):315-328.e6. PubMed   
Zhang W, Zhang X, Xue Z, Li Y, Ma Q, Ren X, Zhang J, Yang S, Yang L, Wu M, Ren M, Xi R, Wu Z, Liu JL, Matunis E, Dai J, Gao G., 2019, "Probing the Function of Metazoan Histones with a Systematic Library of H3 and H4 Mutants." Dev Cell. 48(3):406-419.e5. PubMed  
Mohammad F, Green R, Buskirk AR., 2019, "A systematically-revised ribosome profiling method for bacteria reveals pauses at singlecodon resolution." Elife. 8. pii: e42591. PubMed
Kreutzberger AJB, Ji M, Aaron J, Mihaljević L, Urban S., 2019, "Rhomboid distorts lipids to break the viscosity-imposed speed limit of membrane diffusion. Science. 363(6426). PubMed
Bruner KM, Wang Z, Simonetti FR, Bender AM, Kwon KJ, Sengupta S, Fray EJ, Beg SA, Antar AAR, Jenike KM, Bertagnolli LN, Capoferri AA, Kufera JT, Timmons A, Nobles C, Gregg J, Wada N, Ho YC, Zhang H, Margolick JB, Blankson JN, Deeks SG, Bushman FD, Siliciano JD, Laird GM, Siliciano RF., 2019, "A quantitative approach for measuring the reservoir of latent HIV-1 proviruses." Nature. 566(7742):120-125. PubMed
Howell M, Aliashkevich A, Sundararajan K, Daniel JJ, Lariviere PJ, Goley ED, Cava F, Brown PJB., 2019, "Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division. Mol Microbiol doi: 10.1111/mmi.14212. PubMed
Kothari, P., Srivastava, V., Aggarwal, V., Tchernyshyov, I., Van Eyk, J., Ha, T., and Robinson, DN., 2019, "Contractility kits promote assembly of the mechanoresponsive cytoskeletal network," J. Cell Sci.  132(2): 1-12. PubMed
Avin BA, Wang Y, Gilpatrick T, Workman RE, Lee I, Timp W, Umbricht CB, Zeiger MA., 2019, "Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines." Genes Chromosomes Cancer. doi: 10.1002/gcc.22735. PubMed
Meixiong J, Vasavda C, Green D, Zheng Q, Qi L, Kwatra SG, Hamilton JP, Snyder SH, Dong X., 2019, "Identification of a bilirubin receptor that may mediate a component of cholestatic itch." Elife. 8. pii: e44116. PubMed  
Capowski EE, Samimi K, Mayerl SJ, Phillips MJ, Pinilla I, Howden SE, Saha J, Jansen AD, Edwards KL, Jager LD, Barlow K, Valiauga R, Erlichman Z, Hagstrom A, Sinha D, Sluch VM, Chamling X, Zack DJ, Skala MC, Gamm DM. Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines. Development. 2019 Jan 9;146(1). pii: dev171686. PubMed  
Bowman CE, Wolfgang MJ., 2019, "Role of the malonyl-CoA synthetase ACSF3 in mitochondrial metabolism." Adv Biol Regul. 71:34-40. Review. PubMed

2018

Calzada, E., McCaffery, J.M. and Claypool, S. (2018). Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function. bioRxiv (Pre-print), 269233; doi: Link  
Ogunbona, O. B., Baile, M. G., & Claypool, S. M. (2018). Cardiomyopathy-associated mutation in the ADP/ATP carrier reveals translation-dependent regulation of cytochrome c oxidase activity. Molecular biology of the cell, 29(12), 1449-1464. PMCID: PMC6014099 PubMed  
Ward, A., Kumari, G., Sen, R., Desiderio, S., 2018, "The RAG-2 Inhibitory Domain Gates Accessibility of the V(D)J Recombinase to Chromatin," Mol Cell Biol. 38 (15) e00159-18; PMCID: PMC6048317 PubMed  
Weng YL, Wang X, An R, Cassin J, Vissers C, Liu Y, Liu Y, Xu T, Wang X, Wong SZH, Joseph J, Dore LC, Dong Q, Zheng W, Jin P, Wu H, Shen B, Zhuang X, He C, Liu K, Song H, Ming GL., 2018, "Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System," Neuron, 97(2):313-325 PMCID: PMC5777326 PubMed  
Tutucci E, Livingston NM, Singer RH, Wu B., 2018, "Imaging mRNA In Vivo, from Birth to Death," Annu Rev Biophys. 47:85-106 PubMed  
Minamisawa, G., Kwon, S. E., Chevée, M., Brown, S. P., & O'Connor, D. H. (2018). A Non-canonical Feedback Circuit for Rapid Interactions between Somatosensory Cortices. Cell reports, 23(9), 2718-2731.e6. PubMed  
Chevée, M., Robertson, J. J., Cannon, G. H., Brown, S. P., & Goff, L. A. (2018). Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons. Cell reports, 22(2), 441-455. PMCID: PMC5863578 PubMed
Buss, J., Coltharp, C., Huang, T., Pohlmeyer, C., Wang, SC., Hatem, C. and Xiao, J., 2013, "In vivo organization of the FtsZ-ring by ZapA and ZapB revealed by quantitative super-resolution microscopy," Mol Microbiol. 89(6):1099-120. PMCID: PMC3894617  PubMed
Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M. and Bettencourt-Dias, M., 2016, “CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,”  Curr Biol. 26(9):1127-37. PMCID: PMC4867225 PubMed
Adivarahan, S., Livingston, N., Nicholson, B., Rahman, S., Wu, B., Rissland, OS. and Zenklusen, D., 2018, “Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway,”Mol Cell. 72(4):727-738.e5. PMID: 30415950 PubMed
Wang, Y., Cho, C., Williams, J., Smallwood, PM., Zhang, C., Junge, HJ. and Nathans, J., 2018, “Interplay of the Norrin and Wnt7a/Wnt7b signaling systems in blood-brain barrier and blood-retina barrier development and maintenance,” Proc Natl Acad Sci U S A.pii: 201813217.  PMID: 30478038 PubMed
Wied, TJ., Chin, AC. and Lau, AY., 2018, “High Conformational Variability in the GluK2 Kainate Receptor Ligand-Binding Domain,” Structure. 2018 Oct 5. pii: S0969-2126(18)30334-4. PMID: 30482727 PubMed
Schaffer, TB., Smith, JE., Cook, EK., Phan, T. and Margolis, SS., 2018, “PKCε Inhibits Neuronal Dendritic Spine Development through Dual Phosphorylation of Ephexin5,” Cell Rep. 25(9):2470-2483.e8. PMID: 30485813 PubMed

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