Recent Publications

2017

Kim, SP., Li, Z., Zoch, ML., Frey, JL., Bowman, CE., Kushwaha, P., Ryan, KA., Goh, BC., Scafidi, S., Pickett, JE., Faugere, MC., Kershaw, EE., Thorek, DLJ., Clemens, TL., Wolfgang, MJ. and Riddle, RC., 2017, “Fatty acid oxidation by the osteoblast is required for normal bone acquisition in a sex- and diet-dependent manner,” JCI Insight. 2(16). pii: 92704. PMCID:PMC5621897 PubMed
Burr, R. and Espenshade, PJ., 2017, “Oxygen-responsive transcriptional regulation of lipid homeostasis in fungi: Implications for anti-fungal drug development,” Semin Cell Dev Biol. pii: S1084-9521(17)30201-X. PMCID: PMC5826825 PubMed
Nguyen-Ngoc, KV., Silvestri, VL., Georgess, D., Fairchild, AN. and Ewald, AJ., “Mosaic loss of non-muscle myosin IIA and IIB is sufficient to induce mammary epithelial proliferation,” J Cell Sci. pii: jcs.208546. PMCID: PMC5665442 PubMed
Miao, C., Schiffhauer, ES., Okeke, EI., Robinson, DN. and Luo, T., 2017, “Parallel Compression Is a Fast Low-Cost Assay for the High-Throughput Screening of Mechanosensory Cytoskeletal Proteins in Cells,” ACS Appl Mater Interfaces. 9(34):28168-28179. 21. PMCID:PMC5891216 PubMed
 Cho, C., Smallwood, PM. and Nathans, J., 2017, “Reck and Gpr124 Are Essential Receptor Cofactors for Wnt7a/Wnt7b-Specific Signaling in Mammalian CNS Angiogenesis and Blood-Brain Barrier Regulation,” Neuron. 95(5):1056-1073.e5. PMID: 28803732 PubMed
Dadi, H., Jones, TA., Merico, D., Sharfe, N., Ovadia, A., Schejter, Y., Reid, B., Sun, M., Vong, L., Atkinson, A., Lavi, S., Pomerantz, JL. and Roifman, CM., “Combined immunodeficiency and atopy caused by a dominant negative mutation in CARD11,” J Allergy Clin Immunol. pii: S0091-6749(17)31281-2. PMID: 28826773 PubMed
Yoon, KJ., Song, G., Qian, X., Pan, J., Xu, D., Rho, HS., Kim, NS., Habela, C., Zheng, L., Jacob, F., Zhang, F., Lee, EM., Huang, WK., Ringeling, FR.,Vissers, C., Li, C., Yuan, L., Kang, K., Kim, S., Yeo, J., Cheng, Y., Liu, S., Wen, Z., Qin, CF., Wu, Q., Christian, KM., Tang, H., Jin, P., Xu, Z., Qian, J., Zhu, H., Song and H., Ming, GL., “Zika-Virus-Encoded NS2A Disrupts Mammalian Cortical Neurogenesis by Degrading Adherens Junction Proteins,” Cell Stem Cell. pii: S1934-5909(17)30293-X. PMCID: PMC5600197 PubMed
Kothari, P., Schiffhauer, ES. and Robinson, DN., 2017, "Cytokinesis from nanometers to micrometers and microseconds to minutes," Methods Cell Biol.137:307-322
Lei, X., Seldin, MM., Little, HC., Choy, N., Klonisch, T., and Wong, GW., 2017, “C1q/TNF-related protein 6 (CTRP6) links obesity to adipose tissue inflammation and insulin resistance,” J Biol Chem. jbc.M116.766808. PMCID: 5592665
Lee, J., Choi, J., Selen Alpergin, ES., Zhao, L., Hartung, T., Scafidi, S., Riddle, RC., Wolfgang, MJ., 2017, “Loss of Hepatic Mitochondrial Long-Chain Fatty Acid Oxidation Confers Resistance to Diet-Induced Obesity and Glucose Intolerance,” Cell Rep. 20(3):655-667. PMCID: 25546239 PubMed
Sanders, S., Vierling, RJ., Bartee, D., DeColli, AA., Harrison, MJ., Aklinski, JL., Koppisch, AT. and Freel Meyers, CL., 2017, “Challenges and Hallmarks of Establishing Alkylacetylphosphonates as Probes of Bacterial 1-Deoxy-d-xylulose 5-Phosphate Synthase,” ACS Infect Dis. PMCID: PMC5650741 PubMed
Schuller, AP., and Green, R., 2017, “The ABC(E1)s of Ribosome Recycling and Reinitiation,” Mol Cell. 66(5):578-580. PMID: 28575655 PubMed
Mitchell, CJ., Kim, MS., Na, CH. and Pandey, A., 2017, “PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data,” Mol Cell Proteomics. 15(8):2829-38. PMCID: PMC4974355  PubMed
Welsbie, DS., Mitchell, KL., Jaskula-Ranga, V., Sluch, VM., Yang, Z., Kim, J., Buehler, E., Patel, A., Martin, SE., Zhang, PW., Ge, Y., Duan, Y., Fuller, J., Kim, BJ., Hamed, E., Chamling, X., Lei, L., Fraser, IDC., Ronai, ZA., Berlinicke, CA. and Zack, DJ., 2017, “Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons,” Neuron. 94(6):1142-1154.e6O PMCID: PMC5553555 PubMed
Ogunbona, OB*., Onguka, O.*, Calzada, E.*, Claypool, SM., 2017, “Multitiered and cooperative surveillance of mitochondrial Phosphatidylserine Decarboxylase 1.,”  Mol Cell Biol. pii: MCB.00049-17. PMCID: PMC5559681. *equal contribution  PubMed
Vasavda, C., Zaccor, NW., Scherer, PC., Sumner, CJ. and Snyder, SH., 2017, 2017, “Measuring G-protein-coupled Receptor Signaling via Radio-labeled GTP Binding,” mJ Vis Exp. 2017 Jun 9;(124). PMID: 28654029 PubMed
McClary, B., Zinshteyn, B., Meyer, M., Jouanneau, M., Pellegrino, S., Yusupova, G., Schuller, A., Reyes, JCP., Lu, J., Guo, Z., Ayinde, S., Luo, C., Dang, Y., Romo, D., Yusupov, M., Green, R., and Liu, JO., 2017, “Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A,” Cell Chem Biol. 24(5):605-613.e5. PMCID: PMC5562292  PubMed  
Sundararajan K, and Goley ED, 2017, “Cytoskeletal Proteins in Caulobacter crescentus: Spatial Orchestrators of Cell Cycle Progression, Development, and Cell Shape,” Subcell Biochem. 84:103-137. PMcID: PMC5554946 PubMed
Jernberg, JN., Bowman, CE., Wolfgang, MJ., and Scafidi, SJ., 2017, “Developmental regulation and localization of Carnitine Palmitoyltransferases (CPTs) in rat brain,” Neurochem. PMCID: PMC5927624 PubMed
Ramachandran, K. and Margolis SS., 2017, “A mammalian nervous-system-specific plasma membrane proteasome complex that modulates neuronal function,” Nat Struct Mol Biol. PMCID: PMC5383508   PubMed
Sell, GL., Schaffer, TB., and Margolis, SS., 2017 “Reducing expression of synapse-restricting protein Ephexin5 ameliorates Alzheimer's-like impairment in mice,” J Clin Invest. pii: 85504. PMCID: PMC5409082 PubMed
El-Diwany, R., Breitwieser, FP., Soliman, M., Skaist, AM., Srikrishna, G., Blankson, JN., Ray, SC., Wheelan, SJ., Thomas, DL., and Balagopal, A., 2017, “Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals,”  AIDS. PMCID: PMC5572749 PubMed
Mirsafian, H., Manda, SS., Mitchell, CJ., Sreenivasamurthy, S., Ripen, AM., Mohamad, SB., Merican, AF., Pandey, A., 2016, “Long non-coding RNA expression in primary human monocytes,” Genomics. 108(1):37-45. PMID: 26778813 PubMed
Cox, E., Hwang, W., Uzoma, I., Hu, J., Guzzo, C., Jeong, J., Matunis, M., Qian, J., Zhu, H., and Blackshaw, S., 2017, “Global analysis of SUMO-binding proteins identifies SUMOylation as a key regulator of the INO80 chromatin remodeling complex,” Mol Cell Proteomics. pii: mcp.M116.063719. PMCID: PMC5417823 PubMed
Lu, YW., Acoba, MG., Selvaraju, K., Huang, TC., Nirujogi, RS., Sathe, G., Pandey, A.,and Claypool, SM., 2017, “Human adenine nucleotide translocases physically and functionally interact with respirasomes,” Mol Biol Cell. pii: mbc.E17-03-0195. PMCID: PMC5449148 PubMed
Goodrich, AC., Meyers, DJ. and Frueh, DP., 2-17, “Molecular Impact of Covalent Modifications on Nonribosomal Peptide Synthetase Carrier Protein Communication,” J Biol Chem. 2017 Apr 28. pii: jbc.M116.766220.PMCID: PMC5473208 PubMed
Radley, AH., Schwab, RM., Tan, Y., Kim, J., Lo, EKW., Cahan, P.,2017, “Assessment of engineered cells using CellNet and RNA-seq,” Nat Protoc. 12(5):1089-1102. PMCID: PMC5765439 PubMed
Bowman, CE., Rodriguez, S., Selen Alpergin, ES., Acoba, MG., Zhao, L., Hartung, T., Claypool, SM., Watkins, PA., and Wolfgang, MJ., 2017, “The Mammalian Malonyl-CoA Synthetase ACSF3 Is Required for Mitochondrial Protein Malonylation and Metabolic Efficiency,” Cell Chem Biol. pii: S2451-9456(17)30109-5. PMCID: PMC5482780 PubMed
Schuller, A.P.*, Wu, C.C.*, Dever, T.E., Buskirk, A.R. & Green, R. eIF5A functions globally in translation elongation and termination. Molecular Cell 66, 194–205. PMCID: PMC5414311  PubMed
Ruan, L., Zhou, C., Jin, E., Kucharavy, A., Zhang, Y., Wen, Z., Florens, L., Li, R., 2017, “Cytosolic proteostasis through importing of misfolded proteins into mitochondria,” Nature. PMCID: PMC5793917 PubMed​​
Cairns, L., Tran, T. and Kavran, JM., 2017, “Structural Insights into the Regulation of Hippo Signaling,” ACS Chem Biol. PubMed
Lambrus, BG. and Holland, AJ., 2017, “A New Mode of Mitotic Surveillance,” Trends Cell Biol. pii: S0962-8924(17)30014-4. PMCID: PMC5403546 PubMed
Petersen, PS., Lei, X., Wolf, RM., Rodriguez, S., Tan, SY., Little, HC., Schweitzer, MA., Magnuson, TH., Steele, KE. and Wong, GW., 2017, “CTRP7 deletion attenuates obesity-linked glucose intolerance, adipose tissue inflammation, and hepatic stress,” Am J Physiol Endocrinol Metab. ajpendo.00344.2016. PMID: PMC5406989 PubMed
Bettridge, J., Na, CH., Pandey, A. and Desiderio, S., 2017, “H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase,” Proc Natl Acad Sci U S A. 114(8):1904-1909. PMCID: PMC5338453 PubMed
Burr, R., Stewart, EV. and Espenshade, PJ., 2017, “Coordinate Regulation of Yeast Sterol Regulatory Element-Binding Protein (SREBP) and Mga2 Transcription Factors," J Biol Chem. 2017 Feb 15. pii: jbc.M117.778209. PMCID: PMC5392677 PubMed
Mills, EW., Green, R. and Ingolia, NT., 2017, “Slowed decay of mRNAs enhances platelet specific translation,” Blood. pii: blood-2016-08-736108. PMCID: PMC5409447 PubMed
Gonzalez-Hurtado, E., Lee, J., Choi, J., Selen Alpergin, ES., Collins, SL., Horton, MR. and Wolfgang, MJ., 2017, “The Loss Of Macrophage Fatty Acid Oxidation Does Not Potentiate Systemic Metabolic Dysfunction," Am J Physiol Endocrinol Metab :ajpendo.00408.2016. PMCID: PMC5451524 PubMed
El-Diwany, R., Cohen, VJ., Mankowski, MC., Wasilewski, LN., Brady, JK., Snider, AE., Osburn, WO., Murrell, B., Ray, SC., Bailey, JR., 2017, “Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1,” PLoS Pathog. 13(2):e1006235. PMCID: PMC5342271 PubMed
Li, Z., Tseng, PY., Tiwari, V., Xu, Q., He, SQ., Wang, Y., Zheng, Q., Han, L., Wu, Z., Blobaum, AL., Cui, Y., Tiwari, V., Sun, S., Cheng, Y., Huang-Lionnet, JH., Geng, Y., Xiao, B., Peng, J., Hopkins, C., Raja, SN., Guan, Y. and Dong, X., 2017, “Targeting human Mas-related G protein-coupled receptor X1 to inhibit persistent pain,” Proc Natl Acad Sci U S A. pii: 201615255. PMCID: PMC5347560 PubMed
Bachas, S., Kohrs, B. and Wade, HV.,2017, "Unconventional coupling between ligand recognition and allosteric control in the multidrug resistance gene regulator, BmrR," ChemMedChem. PubMed​
Phua, SC., Chiba, S., Suzuki, M., Su, E., Roberson, EC., Pusapati, GV., Setou, M., Rohatgi, R., Reiter, JF., Ikegami, K. and Inoue, T., 2017, "Dynamic Remodeling of Membrane Composition Drives Cell Cycle through Primary Cilia Excision," Cell. 168(1-2):264-279.e15. PMCID: PMC5660509 PubMed
Levine, MS., Bakker, B., Boeckx, B., Moyett, J., Lu, J., Vitre, B., Spierings, DC., Lansdorp, PM., Cleveland, DW., Lambrechts, D., Foijer, F. and Holland, AJ., 2017, “Centrosome Amplification Is Sufficient to Promote Spontaneous Tumorigenesis in Mammals,” Dev Cell. pii: S1534-5807(16)30917-0. PMCID: PMC5296221 PubMed
Schiffhauer, ES. and Robinson, DN., 2017, “Mechanochemical Signaling Directs Cell-Shape Change,”  Biophys J. 112(2):207-214. Review. PMCID: PMC5266144 PubMed
Peng, YJ., Zhang, X., Gridina, A., Chupikova, I., McCormick, DL., Thomas, RJ., Scammell, TE., Kim, G., Vasavda, C., Nanduri, J., Kumar, GK., Semenza, GL., Snyder, SH. and Prabhakar, NR., 2017, “Complementary roles of gasotransmitters CO and H2S in sleep apnea,” Proc Natl Acad Sci U S A. pii: 201620717. PMCID: PMC5307452 PubMed
Kumar, P., Tan., Y. and Cahan, P., 2017, “Understanding development and stem cells using single cell-based analyses of gene expression,” Development. 144(1):17-32. PMCID: PMC5278625 PubMed
Campbell, DP., Chrysostomou, E. and Doetzlhofer, A., 2016, “Canonical Notch signaling plays an instructive role in auditory supporting cell development,” Sci Rep. 6:19484. PMCID: PMC472625 PubMed
Prasad, TS., Mohanty, AK., Kumar, M., Sreenivasamurthy, SK., Dey, G., Nirujogi, RS., Pinto, SM., Madugundu, AK., Patil, AH., Advani, J., Manda, SS., Gupta, MK., Dwivedi, SB., Kelkar, DS., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, SD., Solanki, HS., Raja, R., Sathe, GJ., Chavan, S., Verma, R., Patel, KM., Jain, AP., Syed, N., Datta, KK., Khan, AA., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, CJ., Na, CH., Kumar, N., Sinnis, P., Sharakhov, IV., Wang, C., Gowda, H., Tu, Z., Kumar, A. and Pandey, A., 2016, “Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes,” Genome Res. 27(1):133-144. PMCID: PMC5204337 PubMed
Burr, R., Stewart, EV., Shao, W., Zhao, S., Hannibal-Bach, HK., Ejsing, CS. and Espenshade, PJ., 2016, “Mga2 Transcription Factor Regulates an Oxygen-responsive Lipid Homeostasis Pathway in Fission Yeast,” J Biol Chem. 291(23):12171-83. PMCID: PMC4933267 PubMed
Lee, J., Choi, J., Aja, S., Scafidi, S. and Wolfgang, MJ., 2016, “Loss of Adipose Fatty Acid Oxidation Does Not Potentiate Obesity at Thermoneutrality,” Cell Rep. 14(6):1308-16. PMCID: PMC4758873 PubMed
Smith, J., Calidas, D., Schmidt, H., Lu, T., Rasoloson, D. and Seydoux, G., 2016, “Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3,” Elife. 5. pii: e21337. PMCID:PMC5262379  PubMed

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