Recent Publications

2019

Schiffhauer, ES., Ren, Y., Iglesias, V., Kothari, P., Iglesias, PA. and Robinson, DN., 2019, "Myosin IIB assembly-state determines myosin IIB mechanosensitive dynamics," J. Cell Biol.218(3):895-908.. PubMed  
Vissers C, Ming GL, Song H., 2019, "Nanoparticle technology and stem cell therapy team up against neurodegenerative disorders." Adv Drug Deliv Rev. pii: S0169-409X(19)30023-7. PubMed
Zhang W, Zhang X, Xue Z, Li Y, Ma Q, Ren X, Zhang J, Yang S, Yang L, Wu M, Ren M, Xi R, Wu Z, Liu JL, Matunis E, Dai J, Gao G., 2019, "Probing the Function of Metazoan Histones with a Systematic Library of H3 and H4 Mutants." Dev Cell. 48(3):406-419.e5. PubMed  
Tao Y, Kang B, Petkovich DA, Bhandari YR, In J, Stein-O'Brien G, Kong X, Xie W, Zachos N, Maegawa S, Vaidya H, Brown S, Chiu Yen RW, Shao X, Thakor J, Lu Z, Cai Y, Zhang Y, Mallona I, Peinado MA, Zahnow CA, Ahuja N, Fertig E, Issa JP, Baylin SB, Easwaran H., 2019, "Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and BrafV600E-Induced Tumorigenesis." Cancer Cell. 35(2):315-328.e6. PubMed   
Mohammad F, Green R, Buskirk AR., 2019, "A systematically-revised ribosome profiling method for bacteria reveals pauses at singlecodon resolution." Elife. 8. pii: e42591. PubMed
Kreutzberger AJB, Ji M, Aaron J, Mihaljević L, Urban S., 2019 Feb 1, "Rhomboid distorts lipids to break the viscosity-imposed speed limit of membrane diffusion. Science. 363(6426). pii: eaao0076. doi: 10.1126/science.aao0076. PMCID: PMC6368390  PubMed
Bruner KM, Wang Z, Simonetti FR, Bender AM, Kwon KJ, Sengupta S, Fray EJ, Beg SA, Antar AAR, Jenike KM, Bertagnolli LN, Capoferri AA, Kufera JT, Timmons A, Nobles C, Gregg J, Wada N, Ho YC, Zhang H, Margolick JB, Blankson JN, Deeks SG, Bushman FD, Siliciano JD, Laird GM, Siliciano RF., 2019, "A quantitative approach for measuring the reservoir of latent HIV-1 proviruses." Nature. 566(7742):120-125. PMID: 30700913. PMCID: PMC6447073. PubMed
Howell M, Aliashkevich A, Sundararajan K, Daniel JJ, Lariviere PJ, Goley ED, Cava F, Brown PJB., 2019, "Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division. Mol Microbiol doi: 10.1111/mmi.14212. PubMed
Kothari, P., Srivastava, V., Aggarwal, V., Tchernyshyov, I., Van Eyk, J., Ha, T., and Robinson, DN., 2019, "Contractility kits promote assembly of the mechanoresponsive cytoskeletal network," J. Cell Sci.  132(2): 1-12. PubMed
Meixiong J, Vasavda C, Green D, Zheng Q, Qi L, Kwatra SG, Hamilton JP, Snyder SH, Dong X., 2019, "Identification of a bilirubin receptor that may mediate a component of cholestatic itch." Elife. 8. pii: e44116. PubMed  
Avin BA, Wang Y, Gilpatrick T, Workman RE, Lee I, Timp W, Umbricht CB, Zeiger MA., 2019, "Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines." Genes Chromosomes Cancer. doi: 10.1002/gcc.22735. PubMed
Capowski EE, Samimi K, Mayerl SJ, Phillips MJ, Pinilla I, Howden SE, Saha J, Jansen AD, Edwards KL, Jager LD, Barlow K, Valiauga R, Erlichman Z, Hagstrom A, Sinha D, Sluch VM, Chamling X, Zack DJ, Skala MC, Gamm DM. 2019 Jan 9. “Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.” Development. 146(1). pii: dev171686. doi: 10.1242/dev.171686. PMID: 3056793. PMCID: PMC6340149. PubMed.  
Bowman CE, Wolfgang MJ., 2019, "Role of the malonyl-CoA synthetase ACSF3 in mitochondrial metabolism." Adv Biol Regul. 71:34-40. Review. PubMed

2018

Calzada, E., McCaffery, J.M. and Claypool, S. (2018). Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function. bioRxiv (Pre-print), 269233; doi: Link  
Ogunbona, O. B., Baile, M. G., & Claypool, S. M. (2018). Cardiomyopathy-associated mutation in the ADP/ATP carrier reveals translation-dependent regulation of cytochrome c oxidase activity. Molecular biology of the cell, 29(12), 1449-1464. PMCID: PMC6014099 PubMed  
Ward, A., Kumari, G., Sen, R., Desiderio, S., 2018, "The RAG-2 Inhibitory Domain Gates Accessibility of the V(D)J Recombinase to Chromatin," Mol Cell Biol. 38 (15) e00159-18; PMCID: PMC6048317 PubMed  
Weng YL, Wang X, An R, Cassin J, Vissers C, Liu Y, Liu Y, Xu T, Wang X, Wong SZH, Joseph J, Dore LC, Dong Q, Zheng W, Jin P, Wu H, Shen B, Zhuang X, He C, Liu K, Song H, Ming GL., 2018, "Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System," Neuron, 97(2):313-325 PMCID: PMC5777326 PubMed  
Tutucci E, Livingston NM, Singer RH, Wu B., 2018, "Imaging mRNA In Vivo, from Birth to Death," Annu Rev Biophys. 47:85-106 PubMed  
Minamisawa, G., Kwon, S. E., Chevée, M., Brown, S. P., & O'Connor, D. H. (2018). A Non-canonical Feedback Circuit for Rapid Interactions between Somatosensory Cortices. Cell reports, 23(9), 2718-2731.e6. PubMed  
Chevée, M., Robertson, J. J., Cannon, G. H., Brown, S. P., & Goff, L. A. (2018). Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons. Cell reports, 22(2), 441-455. PMCID: PMC5863578 PubMed
Buss, J., Coltharp, C., Huang, T., Pohlmeyer, C., Wang, SC., Hatem, C. and Xiao, J., 2013, "In vivo organization of the FtsZ-ring by ZapA and ZapB revealed by quantitative super-resolution microscopy," Mol Microbiol. 89(6):1099-120. PMCID: PMC3894617  PubMed
Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M. and Bettencourt-Dias, M., 2016, “CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,”  Curr Biol. 26(9):1127-37. PMCID: PMC4867225 PubMed
Adivarahan, S., Livingston, N., Nicholson, B., Rahman, S., Wu, B., Rissland, OS. and Zenklusen, D., 2018, “Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway,”Mol Cell. 72(4):727-738.e5. PMID: 30415950 PubMed
Wang, Y., Cho, C., Williams, J., Smallwood, PM., Zhang, C., Junge, HJ. and Nathans, J., 2018, “Interplay of the Norrin and Wnt7a/Wnt7b signaling systems in blood-brain barrier and blood-retina barrier development and maintenance,” Proc Natl Acad Sci U S A.pii: 201813217.  PMID: 30478038 PubMed
Wied, TJ., Chin, AC. and Lau, AY., 2018, “High Conformational Variability in the GluK2 Kainate Receptor Ligand-Binding Domain,” Structure. 2018 Oct 5. pii: S0969-2126(18)30334-4. PMID: 30482727 PubMed
Schaffer, TB., Smith, JE., Cook, EK., Phan, T. and Margolis, SS., 2018, “PKCε Inhibits Neuronal Dendritic Spine Development through Dual Phosphorylation of Ephexin5,” Cell Rep. 25(9):2470-2483.e8. PMID: 30485813 PubMed
Bedsaul, JR., Carter, NM., Deibel, KE., Hutcherson, SM., Jones, TA., Wang, Z., Yang, C., Yang, YK. and Pomerantz, JL., 2018, “Mechanisms of Regulated and Dysregulated CARD11 Signaling in Adaptive Immunity and Disease,” Front Immunol. doi: 10.3389/fimmu.2018.02105. eCollection 2018. Review. PMID: 30283447. PMCID: PMC6156143 PubMed
Zhu, L., Kandasamy, SK., Liao, SE. and Fukunaga, R., 2018, “LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes,” Nat Commun. 9(1):4031. PMCID: PMC6168497 PubMed   
Schmidt, K., Ralle, M., Schaffer, T., Jayakanthan, S., Bari, B., Muchenditsi, A. and Lutsenko, S., 2018, “ATP7A and ATP7B copper transporters have distinct functions in the regulation of neuronal DOPAMINE-β-HYDROXYLASE,” J Biol Chem. pii: jbc.RA118.004889. PMID: 30341172 PubMed
Prasad, S., Huang, J., Zeng, Q., Brooks, BR., 2018, An explicit-solvent hybrid QM and MM approach for predicting pKa of smallmolecules in SAMPL6 challenge, J Comput Aided Mol Des. 32(10):1191-1201, PMID: 30276503. PubMed  
Braun, E., Gilmer, J., Mayes, H., Mobley, D., Monroe, J., Samarjeet, S.P., Zuckerman, D., 2018, Best Practices for Foundations in Molecular Simulations 
Salvatierra J, Diaz-Bustamante M, Meixiong J, Tierney E, Dong X, Bosmans F. 2018 Dec 3. “A disease mutation reveals a role for NaV1.9 in acute itch.” J Clin Invest. 128(12):5434-5447. doi: 10.1172/JCI122481. Epub 2018 Nov 5. PMID: 30395542. PMCID: PMC6264633. PubMed  
Chevée M, Brown SP. 2018 Dec. "The development of local circuits in the neocortex: recent lessons from the mouse visual cortex." Curr Opin Neurobiol. 53:103-109. PMID: 30053693. PMCID: PMC6427921. PubMed
Tammia M, Mi R, Sluch VM, Zhu A, Chung T, Shinn D, Zack DJ, Höke A, Mao HQ. 2018 "Egr2 overexpression in Schwann cells increases myelination frequency in vitro," Heliyon. 4(11):e00982 PubMed
Ryals M, Morell RJ, Martin D, Boger ET, Wu P, Raible DW, Cunningham LL., 2018, "The Inner Ear Heat Shock Transcriptional Signature Identifies Compounds That Protect Against Aminoglycoside Ototoxicity." Front Cell Neurosci. 12:445. PubMed  
Prasad S, Huang J, Zeng Q, Brooks BR. 2018 Oct 1. “An explicit-solvent hybrid QM and MM approach for predicting pKa of small molecules in SAMPL6 challenge.” J Comput Aided Mol Des.;32(10):1191-1201. doi: 10.1007/s10822-018-0167-1.PMID: 30276503. PMCID: PMC6342563. PubMed.  
Chen S, Luperchio TR, Wong X, Doan EB, Byrd AT, Roy Choudhury K, Reddy KL, Krangel MS. (2018) "A Lamina-Associated Domain Border Governs Nuclear Lamina Interactions, Transcription, and Recombination of the Tcrb Locus," Cell Rep. 25(7):1729-1740.e6. PubMed
Metz KA, Teng X, Coppens I, Lamb HM, Wagner BE, Rosenfeld JA, Chen X, Zhang Y, Kim HJ, Meadow ME, Wang TS, Haberlandt ED, Anderson GW, Leshinsky-Silver E, Bi W, Markello TC, Pratt M, Makhseed N, Garnica A, Danylchuk NR, Burrow TA, Jayakar P, McKnight D, Agadi S, Gbedawo H, Stanley C, Alber M, Prehl I, Peariso K, Ong MT, Mordekar SR, Parker MJ, Crooks D, Agrawal PB, Berry GT, Loddenkemper T, Yang Y, Maegawa GHB, Aouacheria A, Markle JG, Wohlschlegel JA, Hartman AL, Hardwick JM. 2018 Nov. “KCTD7 deficiency defines a distinct neurodegenerative disorder with a conserved autophagy-lysosome defect.” Ann Neurol.;84(5):766-780. doi: 10.1002/ana.25351. Epub 2018 Nov 8. PMID: 30295347. PubMed  
Phua, SC., Nihongaki, Y. and Inoue, T., 2018, “Autonomy declared by primary cilia through compartmentalization of membrane phosphoinositides,” Curr Opin Cell Biol.; 50:72-78. PMCID: PMC5911401 PubMed
Tung B, Ma D, Wang S, Oyinlade O, Laterra J, Ying M, Lv SQ, Wei S, Xia S., 2018, "Krüppel-like factor 9 and histone deacetylase inhibitors synergistically induce cell death in glioblastoma stem-like cells." BMC Cancer. 18(1):1025. PubMed
Zhu, J., Tsai, HJ., Gordon, MR., Li, R., 2018, “Cellular Stress Associated with Aneuploidy,” Dev Cell. 44(4):420-431. PMID: 29486194 PubMed  
Wu, M., Hayward, D., Kalin, JH., Song, Y., Schwabe, JW., Cole, PA., 2018, “Lysine-14 acetylation of histone H3 in chromatin confers resistance to the deacetylase and demethylase activities of an epigenetic silencing complex,” Elife. 7. pii: e37231. PMCID: PMC6019071 PubMed
Salvatierra, J., Castro, J., Erickson, A., Li, Q., Braz, J., Gilchrist, J., Grundy, L., Rychkov, GY., Deiteren, A., Rais, R., King, GF., Slusher, BS., Basbaum, A., Pasricha, PJ., Brierley, SM. and Bosmans, F., 2018, “NaV1.1 inhibition can reduce visceral hypersensitivity,” JCI Insight. 3(11). pii: 121000. PMCID: PMC6124407 PubMed
 Liao, SE. and Fukunaga, R., 2018, “Kinetic Analysis of Small Silencing RNA Production by Human and Drosophila Dicer Enzymes In Vitro,” Methods Mol Biol. 1680:101-121. PMID: 29030844 PubMed
Levine, MS. and Holland, AJ., 2018, “The impact of mitotic errors on cell proliferation and tumorigenesis,” Genes Dev.;32(9-10):620-638. PMCID: PMC6004076 [Available on 2018-11-01] PubMed
Duan, R., Kim, JH., Shilagardi, K., Schiffhauer, ES., Lee, DM., Son, S., Li, S., Thomas, C., Luo, T., Fletcher, DA., Robinson, DN. and Chen, EH., 2018, “Spectrin is a mechanoresponsive protein shaping fusogenic synapse architecture during myoblast fusion,” Nat Cell Biol. 20(6):688-698. PMID: 29802406 PubMed
Lambrus, BG., Moyer, TC. and Holland, AJ., 2018, “Applying the auxin-inducible degradation system for rapid protein depletion in mammalian cells,” Methods Cell Biol. 144:107-135. 5. PMID: 29804665 PubMed
Sanders, S., Bartee, D., Harrison, MJ., Phillips, PD., Koppisch, AT. and Freel Meyers, CL., 2018, “Growth medium-dependent antimicrobial activity of early stage MEP pathway inhibitors,” PLoS One. 13(5):e0197638. PMCID: PMC5957436 PubMed
Schuller, AP. and Green, R., 2018, “Roadblocks and resolutions in eukaryotic translation,” Nat Rev Mol Cell Biol. PMCID: PMC6054806 [Available on 2019-02-01] PubMed
Neumann, NM., Perrone, MC., Veldhuis, JH., Huebner, RJ., Zhan, H., Devreotes, PN., Brodland, GW., and Ewald, AJ., 2018, “Coordination of Receptor Tyrosine Kinase Signaling and Interfacial Tension Dynamics Drives Radial Intercalation and Tube Elongation,” Dev Cell. 45(1):67-82.e6. PMCID: PMC5983037 [Available on 2019-04-09] PubMed

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