Recent Publications

2017

Schuller, AP., Zinshteyn, B., Enam, SU. and Green, R., 2017, “Directed hydroxyl radical probing reveals Upf1 binding to the 80S ribosomal E site rRNA at the L1 stalk,” Nucleic Acids Res. PMCID: PMC5829565 PubMed
Kim, DI., Cutler, JA., Na, CH., Reckel, S., Renuse, S., Madugundu, AK., Tahir, R., Goldschmidt, HL., Reddy, KL., Huganir, RL., Wu, X., Zachara, NE., Hantschel, O. and Pandey, A., 2017, “BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation,” J Proteome Res. PMCID: PMC6092923 PubMed
Wan, J., Su, Y., Song, Q., Tung, B., Oyinlade, O., Liu, S., Ying, M., Ming, G. L., Song, H., Qian, J., Zhu, H.,  Xia, S. (2017). Methylated cis-regulatory elements mediate KLF4-dependent gene transactivation and cell migration. eLife, 6, e20068. doi:10.7554/eLife.20068 PubMed  
Kumar, P., Tan, Y. and Cahan, P., 2017, “Understanding development and stem cells using single cell-based analyses of gene expression,” Development. 144(1):17-32. PMCID: PMC5278625 [Available on 2018-01-01] PubMed  
Nakamura, H., Lee, A. A., Afshar, A. S., Watanabe, S., Rho, E., Razavi, S., Suarez, A., Lin, Y. C., Tanigawa, M., Huang, B., DeRose, R., Bobb, D., Hong, W., Gabelli, S. B., Goutsias, J., Inoue, T. (2017). Intracellular production of hydrogels and synthetic RNA granules by multivalent molecular interactions. Nature materials, 17(1), 79-89. PMCID: PMC5916848 PubMed  
Avin, B., Sahli, Z., Zeiger, M., 2017, "Molecular Biology of Endocrine Tumors," In V.T. DeVita, S.A. Rosenberg, T.S. Lawrence (Eds) Cancer: Principles and Practice of Oncology (Chapter 7), 11th Ed., Philadelphia, PA: Wolters Kluwer ISBN 9781496394637  
Lee, CS., Lu, T. and Seydoux, G., 2017, “Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B,” Elife. 6. pii: e30201. PMCID: PMC5734877 PubMed
Sundararajan, K. and Goley, ED., 2017 Oct., "The intrinsically disordered C-terminal linker of FtsZ regulates protofilament dynamics and superstructure <i>in vitro</i>.," J Biol Chem. pii: jbc.M117.809939. PMCID: 5733589 (available on 2018-12-15)  PubMed
Levine, M. and Holland, A., 2017, “Cell cycle proteins moonlight in multiciliogenesis,” Science. 358(6364):716-718. No abstract available. PMCID: PMC5749915 PubMed
Lariviere, PJ., Szwedziak, P., Mahone, CR., Löwe, J. and Goley, ED., 2017, “FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate during Caulobacter division,” Mol Microbiol. PMCID: PMC5760450 PubMed
Surcel, A., Schiffhauer, E.S., Thomas, D., Zhu, Q., DiNapoli, K., Herbig, M., Otto, O., Guck, J. Jaffee, E., Iglesias, P., Anders, R. and Robinson, D., 2017, "Harnessing the adaptive potential of mechanoresponsive proteins to overwhelm pancreatic cancer dissemination and invasion," bioRxiv. 
Burr, R., Ribbens, D., Raychaudhuri, S., Stewart, EV., Ho, J. and Espenshade, PJ., 2017, “Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast,” J Biol Chem. 292(39):16333-16350. PMCID: PMC5625062 PubMed
Clasen, SJ., Shao, W., Gu, H. and Espenshade, P., 2017, “Prolyl dihydroxylation of pre-ribosomal uS12/Rps23 regulates fungal hypoxic adaptation,” Elife. 6. pii: e28563. PMCID: PMC5690285 PubMed  
Lee, JH., Wendorff, TJ. and Berger, JM., 2017, “Resveratrol: a novel type of topoisomerase II inhibitor,” J Biol Chem. pii: jbc.M117.810580. PMCID: PMC5743075 (available on 2018-12-22) PubMed
Greenspan, LJ. and Matunis, EL., 2017, “Live Imaging of the Drosophila Testis Stem Cell Niche,” Methods Mol Biol. 1463:63-74. PMID: 27734347 PubMed
Kuzmichev, YV., Veenhuis, RT., Pohlmeyer, CW., Garliss, CC., Walker- Sperling, VE., Blankson, JN., 2017, "A CD3/CD28 microbead-based HIV-1 viral outgrowth assay," J Virus Erad. 3(2):85-89. PMCID: PMC5384271. PubMed
Walker-Sperling, VE., Pohlmeyer, CW., Veenhuis, RT., May, M., Luna, KA., Kirkpatrick, AR., Laeyendecker, O., Cox, AL., Carrington, M., Bailey, JR., Arduino, RC. and Blankson, JN., 2017, "Factors Associated With the Control of Viral Replication and Virologic Breakthrough in a Recently Infected HIV-1 Controller,"  EBioMedicine. 16:141-149. PMCID: PMC5474502 PubMed
Yoon, KJ., Ringeling, FR., Vissers, C., Jacob, F., Pokrass, M., Jimenez-Cyrus, D., Su, Y., Kim, NS., Zhu, Y., Zheng, L., Kim, S., Wang, X., Doré, LC., Jin, P., Regot, S., Zhuang, X., Canzar, S., He, C., Ming, GL. and Song, H., 2017, "Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation," Cell. 201pii: S0092-8674(17)31052-8 PMCID: PMC5679435 (available 2018-11-02) PubMed
Ogunbona, OB., Onguka, O., Calzada, E. and Claypool, SM., 2017, “Multitiered and Cooperative Surveillance of Mitochondrial Phosphatidylserine Decarboxylase 1,” Mol Cell Biol. 2017 37(17). pii: e00049-17. PMCID: PMC5559681 PubMed 
Meier, EL., Daitch, AK., Yao, Q., Bhargava, A., Jensen, GJ. and Goley, ED., 2017, “FtsEX-mediated regulation of the final stages of cell division reveals morphogenetic plasticity in Caulobacter crescentus,” PLoS Genet. 13(9):e1006999. PMCID: PMC5607218 PubMed
Kim, SP., Li, Z., Zoch, ML., Frey, JL., Bowman, CE., Kushwaha, P., Ryan, KA., Goh, BC., Scafidi, S., Pickett, JE., Faugere, MC., Kershaw, EE., Thorek, DLJ., Clemens, TL., Wolfgang, MJ. and Riddle, RC., 2017, “Fatty acid oxidation by the osteoblast is required for normal bone acquisition in a sex- and diet-dependent manner,” JCI Insight. 2(16). pii: 92704. PMCID:PMC5621897 PubMed
Burr, R. and Espenshade, PJ., 2017, “Oxygen-responsive transcriptional regulation of lipid homeostasis in fungi: Implications for anti-fungal drug development,” Semin Cell Dev Biol. pii: S1084-9521(17)30201-X. PMCID: PMC5826825 PubMed
Nguyen-Ngoc, KV., Silvestri, VL., Georgess, D., Fairchild, AN. and Ewald, AJ., “Mosaic loss of non-muscle myosin IIA and IIB is sufficient to induce mammary epithelial proliferation,” J Cell Sci. pii: jcs.208546. PMCID: PMC5665442 PubMed
Miao, C., Schiffhauer, ES., Okeke, EI., Robinson, DN. and Luo, T., 2017, “Parallel Compression Is a Fast Low-Cost Assay for the High-Throughput Screening of Mechanosensory Cytoskeletal Proteins in Cells,” ACS Appl Mater Interfaces. 9(34):28168-28179. 21. PMCID:PMC5891216 PubMed
 Cho, C., Smallwood, PM. and Nathans, J., 2017, “Reck and Gpr124 Are Essential Receptor Cofactors for Wnt7a/Wnt7b-Specific Signaling in Mammalian CNS Angiogenesis and Blood-Brain Barrier Regulation,” Neuron. 95(5):1056-1073.e5. PMID: 28803732 PubMed
Yoon, KJ., Song, G., Qian, X., Pan, J., Xu, D., Rho, HS., Kim, NS., Habela, C., Zheng, L., Jacob, F., Zhang, F., Lee, EM., Huang, WK., Ringeling, FR.,Vissers, C., Li, C., Yuan, L., Kang, K., Kim, S., Yeo, J., Cheng, Y., Liu, S., Wen, Z., Qin, CF., Wu, Q., Christian, KM., Tang, H., Jin, P., Xu, Z., Qian, J., Zhu, H., Song and H., Ming, GL., “Zika-Virus-Encoded NS2A Disrupts Mammalian Cortical Neurogenesis by Degrading Adherens Junction Proteins,” Cell Stem Cell. pii: S1934-5909(17)30293-X. PMCID: PMC5600197 PubMed
Kothari, P., Schiffhauer, ES. and Robinson, DN., 2017, "Cytokinesis from nanometers to micrometers and microseconds to minutes," Methods Cell Biol.137:307-322
Lei, X., Seldin, MM., Little, HC., Choy, N., Klonisch, T., and Wong, GW., 2017, “C1q/TNF-related protein 6 (CTRP6) links obesity to adipose tissue inflammation and insulin resistance,” J Biol Chem. jbc.M116.766808. PMCID: 5592665
Lee, J., Choi, J., Selen Alpergin, ES., Zhao, L., Hartung, T., Scafidi, S., Riddle, RC., Wolfgang, MJ., 2017, “Loss of Hepatic Mitochondrial Long-Chain Fatty Acid Oxidation Confers Resistance to Diet-Induced Obesity and Glucose Intolerance,” Cell Rep. 20(3):655-667. PMCID: 25546239 PubMed
Sanders, S., Vierling, RJ., Bartee, D., DeColli, AA., Harrison, MJ., Aklinski, JL., Koppisch, AT. and Freel Meyers, CL., 2017, “Challenges and Hallmarks of Establishing Alkylacetylphosphonates as Probes of Bacterial 1-Deoxy-d-xylulose 5-Phosphate Synthase,” ACS Infect Dis. PMCID: PMC5650741 PubMed
Schuller, AP., and Green, R., 2017, “The ABC(E1)s of Ribosome Recycling and Reinitiation,” Mol Cell. 66(5):578-580. PMID: 28575655 PubMed
Welsbie, DS., Mitchell, KL., Jaskula-Ranga, V., Sluch, VM., Yang, Z., Kim, J., Buehler, E., Patel, A., Martin, SE., Zhang, PW., Ge, Y., Duan, Y., Fuller, J., Kim, BJ., Hamed, E., Chamling, X., Lei, L., Fraser, IDC., Ronai, ZA., Berlinicke, CA. and Zack, DJ., 2017, “Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons,” Neuron. 94(6):1142-1154.e6O PMCID: PMC5553555 PubMed
Vasavda, C., Zaccor, NW., Scherer, PC., Sumner, CJ. and Snyder, SH., 2017, 2017, “Measuring G-protein-coupled Receptor Signaling via Radio-labeled GTP Binding,” mJ Vis Exp. 2017 Jun 9;(124). PMID: 28654029 PubMed
McClary, B., Zinshteyn, B., Meyer, M., Jouanneau, M., Pellegrino, S., Yusupova, G., Schuller, A., Reyes, JCP., Lu, J., Guo, Z., Ayinde, S., Luo, C., Dang, Y., Romo, D., Yusupov, M., Green, R., and Liu, JO., 2017, “Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A,” Cell Chem Biol. 24(5):605-613.e5. PMCID: PMC5562292  PubMed  
Sundararajan K, and Goley ED, 2017, “Cytoskeletal Proteins in Caulobacter crescentus: Spatial Orchestrators of Cell Cycle Progression, Development, and Cell Shape,” Subcell Biochem. 84:103-137. PMcID: PMC5554946 PubMed
Jernberg, JN., Bowman, CE., Wolfgang, MJ., and Scafidi, SJ., 2017, “Developmental regulation and localization of Carnitine Palmitoyltransferases (CPTs) in rat brain,” Neurochem. PMCID: PMC5927624 PubMed
Ramachandran, K. and Margolis SS., 2017, “A mammalian nervous-system-specific plasma membrane proteasome complex that modulates neuronal function,” Nat Struct Mol Biol. PMCID: PMC5383508   PubMed
Sell, GL., Schaffer, TB., and Margolis, SS., 2017 “Reducing expression of synapse-restricting protein Ephexin5 ameliorates Alzheimer's-like impairment in mice,” J Clin Invest. pii: 85504. PMCID: PMC5409082 PubMed
El-Diwany, R., Breitwieser, FP., Soliman, M., Skaist, AM., Srikrishna, G., Blankson, JN., Ray, SC., Wheelan, SJ., Thomas, DL., and Balagopal, A., 2017, “Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals,”  AIDS. PMCID: PMC5572749 PubMed
Cox, E., Hwang, W., Uzoma, I., Hu, J., Guzzo, C., Jeong, J., Matunis, M., Qian, J., Zhu, H., and Blackshaw, S., 2017, “Global analysis of SUMO-binding proteins identifies SUMOylation as a key regulator of the INO80 chromatin remodeling complex,” Mol Cell Proteomics. pii: mcp.M116.063719. PMCID: PMC5417823 PubMed
Lu, YW., Acoba, MG., Selvaraju, K., Huang, TC., Nirujogi, RS., Sathe, G., Pandey, A.,and Claypool, SM., 2017, “Human adenine nucleotide translocases physically and functionally interact with respirasomes,” Mol Biol Cell. pii: mbc.E17-03-0195. PMCID: PMC5449148 PubMed
Goodrich, AC., Meyers, DJ. and Frueh, DP., 2-17, “Molecular Impact of Covalent Modifications on Nonribosomal Peptide Synthetase Carrier Protein Communication,” J Biol Chem. 2017 Apr 28. pii: jbc.M116.766220.PMCID: PMC5473208 PubMed
Radley, AH., Schwab, RM., Tan, Y., Kim, J., Lo, EKW., Cahan, P.,2017, “Assessment of engineered cells using CellNet and RNA-seq,” Nat Protoc. 12(5):1089-1102. PMCID: PMC5765439 PubMed
Bowman, CE., Rodriguez, S., Selen Alpergin, ES., Acoba, MG., Zhao, L., Hartung, T., Claypool, SM., Watkins, PA., and Wolfgang, MJ., 2017, “The Mammalian Malonyl-CoA Synthetase ACSF3 Is Required for Mitochondrial Protein Malonylation and Metabolic Efficiency,” Cell Chem Biol. pii: S2451-9456(17)30109-5. PMCID: PMC5482780 PubMed
Schuller, A.P., Wu, C.C., Dever, T.E., Buskirk, A.R. & Green, R., 2017, eIF5A functions globally in translation elongation and termination. Molecular Cell 66, 194–205. PMCID: PMC5414311  PubMed
Ruan, L., Zhou, C., Jin, E., Kucharavy, A., Zhang, Y., Wen, Z., Florens, L., Li, R., 2017, “Cytosolic proteostasis through importing of misfolded proteins into mitochondria,” Nature. PMCID: PMC5793917 PubMed​​
Cairns, L., Tran, T. and Kavran, JM., 2017, “Structural Insights into the Regulation of Hippo Signaling,” ACS Chem Biol. PubMed
Lambrus, BG. and Holland, AJ., 2017, “A New Mode of Mitotic Surveillance,” Trends Cell Biol. pii: S0962-8924(17)30014-4. PMCID: PMC5403546 PubMed
Petersen, PS., Lei, X., Wolf, RM., Rodriguez, S., Tan, SY., Little, HC., Schweitzer, MA., Magnuson, TH., Steele, KE. and Wong, GW., 2017, “CTRP7 deletion attenuates obesity-linked glucose intolerance, adipose tissue inflammation, and hepatic stress,” Am J Physiol Endocrinol Metab. ajpendo.00344.2016. PMID: PMC5406989 PubMed
Bettridge, J., Na, CH., Pandey, A. and Desiderio, S., 2017, “H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase,” Proc Natl Acad Sci U S A. 114(8):1904-1909. PMCID: PMC5338453 PubMed

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