Recent Publications

2018

Little HC, Tan SY, Cali FM, Rodriguez S, Lei X, Wolfe A, Hug C, Wong GW., 2018, “Multiplex Quantification Identifies Novel Exercise-regulated Myokines/Cytokines in Plasma and in Glycolytic and Oxidative Skeletal Muscle”, Mol Cell Proteomics. 17(8):1546-1563. PMCID: PMC6072542. PubMed                      
Lilley, BN., Sabbah, S., Hunyara, JL., Gribble, KD., Al-Khindi, T., Xiong, J., Wu, Z., Berson, DM., Kolodkin, AL., 2018, “Genetic access to neurons in the accessory optic system reveals a role for Sema6A in midbrain circuitry mediating motion perception,” J Comp Neurol. PubMed
Liao, SE., Ai, Y. and Fukunaga, R., 2018, “An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in <i>Drosophila</i> testes,” Heliyon. 2018 Jul 25;4(7):e00706. eCollection. PMCID: PMC6074722 PubMed
Ramachandran, KV., Fu, JM., Schaffer, TB., Na, CH., Delannoy, M. and Margolis, SS., 2018, “Activity-Dependent Degradation of the Nascentome by the Neuronal Membrane Proteasome,” Mol Cell. 71(1):169-177.e6. PMCID: PMC6070390 [Available on 2019-07-05] PubMed
Sundararajan, K., Vecchiarelli, A., Mizuuchi, K. and Goley, ED., 2018, “Species- and C-terminal linker-dependent variations in the dynamic behavior of FtsZ on membranes in vitro,” Mol Microbiol. PMID: 30010220. PMCID: PMC6195856. PubMed
Divakaruni, AS., Hsieh, WY., Minarrieta, L., Duong, TN., Kim, KKO., Desousa, BR., Andreyev, AY., Bowman, CE., Caradonna, K., Dranka, BP., Ferrick, DA., Liesa, M., Stiles, L., Rogers, GW., Braas, D., Ciaraldi, TP., Wolfgang, MJ., Sparwasser, T., Berod, L., Bensinger, SJ. and Murphy, AN., 2018, “Etomoxir Inhibits Macrophage Polarization by Disrupting CoA Homeostasis,” Cell Metab. 2018 Jun 16. pii: S1550-4131(18)30383-8.  PMCID: PMC6125190 [Available on 2019-09-04] PubMed
Sirka OK, Shamir ER, Ewald AJ. 2018 Oct 1. “Myoepithelial cells are a dynamic barrier to epithelial dissemination.” J Cell Biol. 217(10):3368-3381. doi: 10.1083/jcb.201802144. Epub 2018 Jul 30. PMID: 30061105. PMCID: PMC6168248. PubMed.  
Eldred KC, Hadyniak SE, Hussey KA, Brenerman B, Zhang PW, Chamling X, Sluch VM, Welsbie DS, Hattar S, Taylor J, Wahlin K, Zack DJ, Johnston RJ Jr. 2018 "Thyroid hormone signaling specifies cone subtypes in human retinal organoids," Science. 362(6411). PubMed
Divakaruni AS, Hsieh WY, Minarrieta L, Duong TN, Kim KKO, Desousa BR, Andreyev AY, Bowman CE, Caradonna K, Dranka BP, Ferrick DA, Liesa M, Stiles L, Rogers GW, Braas D, Ciaraldi TP, Wolfgang MJ, Sparwasser T, Berod L, Bensinger SJ, Murphy AN. 2018 Sep 4. “Etomoxir Inhibits Macrophage Polarization by Disrupting CoA Homeostasis.”Cell Metab.;28(3):490-503.e7. doi: 10.1016/j.cmet.2018.06.001. Epub 2018 Jun 28. PMID: 30043752. PMCID: PMC6125190. PubMed.  
Fligor CM, Langer KB, Sridhar A, Ren Y, Shields PK, Edler MC, Ohlemacher SK, Sluch VM, Zack DJ, Zhang C, Suter DM, Meyer JS., 2018, "Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells." Sci Rep. 8(1):14520. PubMed
Veenhuis RT, Kwaa AK, Garliss CC, Latanich R, Salgado M, Pohlmeyer CW, Nobles CL, Gregg J, Scully EP, Bailey JR, Bushman FD, Blankson JN. 2018, "Long-term remission despite clonal expansion of replication-competent HIV-1 isolates." JCI Insight. 3(18). PubMed  
Zhou Y, Bond AM, Shade JE, Zhu Y, Davis CO, Wang X, Su Y, Yoon KJ, Phan AT, Chen WJ, Oh JH, Marsh-Armstrong N, Atabai K, Ming GL, Song H. 2018 Sep 6. “Autocrine Mfge8 Signaling Prevents Developmental Exhaustion of the Adult Neural Stem Cell Pool.” Cell Stem Cell. 23(3):444-452.e4. doi: 10.1016/j.stem.2018.08.005. Epub 2018 Aug 30. PMID: 30174295. PMCID: PMC6128767. PubMed.  
Greenspan LJ, Matunis EL., 2018, "Retinoblastoma Intrinsically Regulates Niche Cell Quiescence, Identity, and Niche Number in the Adult Drosophila Testis." Cell Rep. 24(13):3466-3476.e8. PubMed
Wei S, Wang J, Oyinlade O, Ma D, Wang S, Kratz L, Lal B, Xu Q, Liu S, Shah SR, Zhang H, Li Y, Quiñones-Hinojosa A, Zhu H, Huang ZY, Cheng L, Qian J, Xia S., 2018, "Heterozygous IDH1R132H/WT created by "single base editing" inhibits human astroglial cell growth by downregulating YAP." Oncogene. 37(38):5160-5174. PubMed
Salvatierra J, Castro J, Erickson A, Li Q, Braz J, Gilchrist J, Grundy L, Rychkov GY, Deiteren A, Rais R, King GF, Slusher BS, Basbaum A, Pasricha PJ, Brierley SM, Bosmans F. 2018 Jun 7. “NaV1.1 inhibition can reduce visceral hypersensitivity” JCI Insight 3(11). pii: 121000. doi: 10.1172/jci.insight.121000. eCollection 2018 Jun 7. PMID: 29875317. PMCID: PMC6124407. PubMed.
El-Diwany R, Soliman M, Sugawara S, Breitwieser F, Skaist A, Coggiano C, Sangal N, Chattergoon M, Bailey JR, Siliciano RF, Blankson JN, Ray SC, Wheelan SJ, Thomas DL, Balagopal A. 2018 Aug 1. “CMPK2 and BCL-G are associated with type 1 interferon-induced HIV restriction in humans.” Sci Adv. 4(8):eaat0843. doi: 10.1126/sciadv.aat0843. eCollection 2018 Aug. PMID: 30083606. PMCID: PMC6070316. PubMed.  
Goodwin CR, Rath P, Oyinlade O, Lopez H, Mughal S, Xia S, Li Y, Kaur H, Zhou X, Ahmed AK, Ho S, Olivi A, Lal B., 2018, "Crizotinib and erlotinib inhibits growth of c-Met+/EGFRvIII+ primary human glioblastoma xenografts." Clin Neurol Neurosurg. 171:26-33. PubMed  
Han L, Limjunyawong N, Ru F, Li Z, Hall OJ, Steele H, Zhu Y, Wilson J, Mitzner W, Kollarik M, Undem BJ, Canning BJ, Dong X., 2018 Mar. "Mrgprs on vagal sensory neurons contribute to bronchoconstriction and airway hyper-responsiveness." Nat Neurosci, 21(3):324-328. doi: 10.1038/s41593-018-0074-8. PMCID: PMC5857222. PubMed.
Gonzalez-Hurtado E, Lee J, Choi J, Wolfgang MJ., 2018 Jan, "Fatty acid oxidation is required for active and quiescent brown adipose tissue maintenance and thermogenic programing." Mol Metab, doi: 10.1016/j.molmet.2017.11.004. PMCID: PMC5784326. PubMed.
Cairns, L., Tran, T., Fowl, BH., Patterson, A., Kim, YJ., Bothner, B. and Kavran, JM., 2018, “Salvador has an extended SARAH domain that mediates binding to Hippo kinase,” J Biol Chem. pii: jbc.RA117.000923. PMCID: PMC5900767 PubMed
Oldach, LM., Gorshkov, K., Mills, WT. 4th,  Zhang, J. and Meffert, MK., 2018, “A Biosensor for MAPK-Dependent Lin28 Signaling,” Mol Biol Cell. pii: mbc.E17-08-0500. PMCID: PMC5935066 PubMed
Yoon, KJ., Vissers, C., Ming, GL. and Song, H., 2018, “Epigenetics and epitranscriptomics in temporal patterning of cortical neural progenitor competence,” J Cell Biol. pii: jcb.201802117. Review. PMCID: PMC5987727 PubMed
Kalin, JH., Wu, M., Gomez, AV., Song, Y., Das, J., Hayward, D., Adejola, N., Wu, M., Panova, I., Chung, HJ., Kim, E., Roberts, HJ., Roberts, JM., Prusevich, P., Jeliazkov, JR., Roy Burman, SS., Fairall, L., Milano, C., Eroglu, A., Proby, CM., Dinkova-Kostova, AT., Hancock, WW., Gray, JJ., Bradner, JE., Valente, S., Mai, A., Anders, NM., Rudek, MA., Hu, Y., Ryu, B., Schwabe, JWR., Mattevi, A., Alani, RM. and Cole, PA., 2018, “Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors,” Nat Commun. 9(1):53. PMCID: PMC5754352 PubMed
Wang, S., Shi, X., Wei, S., Ma, D., Ajala, O., Lv, SQ., Ying, M., Zhang, YA., Claypool, SM., Watkins, P. and Xia, S., 2018, “Krüppel-like factor 4 (KLF4) induces mitochondrial fusion and increases spare respiratory capacity of human glioblastoma cells,” J Biol Chem. pii: jbc.RA117.001323. PMCID: PMC5925822 PubMed
West-Foyle, H., Kothari, P., Osborne, J. and Robinson, DN., 2018, “14-3-3 proteins tune non-muscle myosin II assembly,” J Biol Chem. pii: jbc.M117.819391. PMCID: PMC5936829 PubMed
Ruan, L., Zhang, X. and Li, R., 2018, “Recent insights into the cellular and molecular determinants of aging,” J Cell Sci. 131(3). pii: jcs210831. doi: 10.1242/jcs.210831. Review. PMCID: PMC5826050 PubMed
Islam, N. and Garza, LA., 2018, “Adipose and Hair Function: An aPPARent Connection,” J Invest Dermatol. 138(3):480-482. PMID: 29477189 PubMed
Gilbert, CE., Sztul, E., Machamer, CE., 2018, “Commonly used trafficking blocks disrupt ARF1 activation and the localization and function of specific Golgi proteins,” Mol Biol Cell. pii: mbc.E17-11-0622. PMCID: PMC5896932 [Available on 2018-06-30] PubMed
Uzoma, I., Hu, J., Cox, E., Xia, S., Zhou, J., Rho, HS., Guzzo, C., Paul, C., Ajala, O., Goodwin, CR., Jeong, J., Moore, C., Zhang, H., Meluh, P., Blackshaw, S., Matunis, M., Qian, J., Zhu, H., 2018, “Global Identification of SUMO Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration,” Mol Cell Proteomics. pii: mcp.RA117.000014. PMCID: PMC5930406 Pubmed
Sluch VM, Chamling X, Wenger C, Duan Y, Rice DS, Zack DJ., 2018, “Highly efficient scarless knock-in of reporter genes into human and mouse pluripotent stem cells via transient antibiotic selection”, PLoS One. 13(11):e0201683. PMCID: PMC6264506. PubMed  
Oyinlade O, Wei S, Lal B, Laterra J, Zhu H, Goodwin CR, Wang S, Ma D, Wan J, Xia S. 2018, "Targeting UDP-α-D-glucose 6-dehydrogenase inhibits glioblastoma growth and migration." Oncogene. 37(20):2615-2629. PubMed
Dresselhaus EC, Boersma MCH, Meffert MK. 2018 Apr 25. “Targeting of NF-κB to Dendritic Spines Is Required for Synaptic Signaling and Spine Development” J Neurosci.;38(17):4093-4103. doi: 10.1523/JNEUROSCI.2663-16.2018. Epub 2018 Mar 19. PMID: 29555853. PMCID: PMC5963848. PubMed.  
Schuller AP, Zinshteyn B, Enam SU, Green R. 2018 Feb 28. “Directed hydroxyl radical probing reveals Upf1 binding to the 80S ribosomal E site rRNA at the L1 stalk.” Nucleic Acids Res.; 46(4):2060-2073. doi: 10.1093/nar/gkx1263. PMID: 29253221. PMCID: PMC5829565 PubMed.  
Pohlmeyer CW, Laskey SB, Beck SE, Xu DC, Capoferri AA, Garliss CC, May ME, Livingston A, Lichmira W, Moore RD, Leffell MS, Butler NJ, Thorne JE, Flynn JA, Siliciano RF, Blankson JN. 2018, "Cross-reactive microbial peptides can modulate HIV-specific CD8+ T cell responses." PLoS One. 13(2):e0192098. PubMed  
Daniszewski M, Senabouth A, Nguyen QH, Crombie DE, Lukowski SW, Kulkarni T, Sluch VM, Jabbari JS, Chamling X, Zack DJ, Pébay A, Powell JE, Hewitt AW., 2018, "Single cell RNA sequencing of stem cell-derived retinal ganglion cells." Sci Data. 5:180013. PubMed  
Gonzalez-Hurtado E, Lee J, Choi J, Wolfgang MJ. 2018, "Fatty acid oxidation is required for active and quiescent brown adipose tissue maintenance and thermogenic programing," Mol Metab. 45-56. PubMed

2017

Yourik, P., Aitken, CE., Zhou, F., Gupta, N., Hinnebusch, AG. and Lorsch, JR., 2017, “Yeast eIF4A enhances recruitment of mRNAs regardless of their structural complexity,” Elife. 6. pii: e31476. PMCID: PMC5726853 PubMed
Vissers, C., Ming, GL. and Song, H., 2017, “Stem cells take the stairs,” J Biol Chem. 292(48):19605-19606. PMCID: PMC5712602 PubMed
Scherer, PC., Zaccor, NW., Neumann, NM., Vasavda, C., Barrow, R., Ewald, AJ., Rao, F., Sumner, CJ. and Snyder, SH., 2017, “TRPV1 is a physiological regulator of μ-opioid receptors,”  Proc Natl Acad Sci U S A. 114(51):13561-13566. PMCID: PMC5754810  PubMed
Schuller, AP., Zinshteyn, B., Enam, SU. and Green, R., 2017, “Directed hydroxyl radical probing reveals Upf1 binding to the 80S ribosomal E site rRNA at the L1 stalk,” Nucleic Acids Res. PMCID: PMC5829565 PubMed
Kim, DI., Cutler, JA., Na, CH., Reckel, S., Renuse, S., Madugundu, AK., Tahir, R., Goldschmidt, HL., Reddy, KL., Huganir, RL., Wu, X., Zachara, NE., Hantschel, O. and Pandey, A., 2017, “BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation,” J Proteome Res. PMCID: PMC6092923 PubMed
Wan, J., Su, Y., Song, Q., Tung, B., Oyinlade, O., Liu, S., Ying, M., Ming, G. L., Song, H., Qian, J., Zhu, H.,  Xia, S. (2017). Methylated cis-regulatory elements mediate KLF4-dependent gene transactivation and cell migration. eLife, 6, e20068. doi:10.7554/eLife.20068 PubMed  
Nakamura, H., Lee, A. A., Afshar, A. S., Watanabe, S., Rho, E., Razavi, S., Suarez, A., Lin, Y. C., Tanigawa, M., Huang, B., DeRose, R., Bobb, D., Hong, W., Gabelli, S. B., Goutsias, J., Inoue, T. (2017). Intracellular production of hydrogels and synthetic RNA granules by multivalent molecular interactions. Nature materials, 17(1), 79-89. PMCID: PMC5916848 PubMed  
Avin, B., Sahli, Z., Zeiger, M., 2017, "Molecular Biology of Endocrine Tumors," In V.T. DeVita, S.A. Rosenberg, T.S. Lawrence (Eds) Cancer: Principles and Practice of Oncology (Chapter 7), 11th Ed., Philadelphia, PA: Wolters Kluwer ISBN 9781496394637  
Lee, CS., Lu, T. and Seydoux, G., 2017, “Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B,” Elife. 6. pii: e30201. PMCID: PMC5734877 PubMed
Sundararajan, K. and Goley, ED., 2017 Oct., "The intrinsically disordered C-terminal linker of FtsZ regulates protofilament dynamics and superstructure <i>in vitro</i>.," J Biol Chem. pii: jbc.M117.809939. PMCID: 5733589 (available on 2018-12-15)  PubMed
Levine, M. and Holland, A., 2017, “Cell cycle proteins moonlight in multiciliogenesis,” Science. 358(6364):716-718. No abstract available. PMCID: PMC5749915 PubMed
Lariviere, PJ., Szwedziak, P., Mahone, CR., Löwe, J. and Goley, ED., 2017, “FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate during Caulobacter division,” Mol Microbiol. PMCID: PMC5760450 PubMed
Surcel, A., Schiffhauer, E.S., Thomas, D., Zhu, Q., DiNapoli, K., Herbig, M., Otto, O., Guck, J. Jaffee, E., Iglesias, P., Anders, R. and Robinson, D., 2017, "Harnessing the adaptive potential of mechanoresponsive proteins to overwhelm pancreatic cancer dissemination and invasion," bioRxiv. 
Burr, R., Ribbens, D., Raychaudhuri, S., Stewart, EV., Ho, J. and Espenshade, PJ., 2017, “Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast,” J Biol Chem. 292(39):16333-16350. PMCID: PMC5625062 PubMed

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