Recent Publications

2016

Ellison, D., Mugler, A., Brennan, MD., Lee, SH., Huebner, RJ., Shamir, ER., Woo, LA., Kim, J., Amar, P., Nemenman, I., Ewald, AJ. and Levchenko, A., 2016, "Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis," Proc Natl Acad Sci U S A. pii: 201516503. PubMed
Goldschmidt, HL., Tu-Sekine, B., Volk, L., Anggono, V., Huganir, RL. and Raben, DM., 2016,  "DGKθ Catalytic Activity Is Required for Efficient Recycling of Presynaptic Vesicles at Excitatory Synapses," Cell Rep. 14(2):200-7. PubMed
Mirsafian, H., Manda, SS., Mitchell, CJ., Sreenivasamurthy, S., Ripen, AM., Mohamad, SB., Merican, AF., and Pandey, A., 2016,  "Long non-coding RNA expression in human primary monocytes," Genomics. pii: S0888-7543(16)30002-7. PubMed
Wasilewski, LN., El-Diwany, R., Munshaw, S., Snider, AE., Brady, JK., Osburn, WO., Ray, SC., and Bailey, JR., 2016, "A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies," J Virol. pii: JVI.02837-15. PubMed
Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS. and Pomerantz, JL., 2015, "Negative Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. pii: MCB.00876-15.  PubMed
Jattani, RP., Tritapoe, JM., and Pomerantz, JL., 2016, "Cooperative Control of Caspase Recruitment Domain-Containing Protein 11 (CARD11) Signaling by an Unusual Array of Redundant Repressive Elements," J Biol Chem. pii: jbc.M115.683714.​​ PubMed
Jattani, RP., Tritapoe, JM., and Pomerantz, JL., 2016, "Intramolecular Interactions and Regulation of Cofactor Binding by the Four Repressive Elements in the Caspase Recruitment Domain-Containing Protein 11 (CARD11) Inhibitory Domain," J Biol Chem. pii: jbc.M116.717322.​​PubMed
Lu, YW., Galbraith, L., Herndon, JD., Lu, YL., Pras-Raves, M., Vervaart, M., van Kampen, A., Luyf, A., Koehler, CM., McCaffery, JM., Gottlieb, E., Vaz, FM., and Claypool, SM., 2016, "Defining functional classes of Barth syndrome mutation in humans," Hum Mol Genet. pii: ddw046.​ PubMed
Nomura, M., Liu, J., Rovira, II., Gonzalez-Hurtado, E., Lee, J., Wolfgang, MJ., and Finkel, T., 2016, "Fatty acid oxidation in macrophage polarization," Nat Immunol. 17(3):216-7.​​ PubMed
Lee, J., Choi, J., Aja, S., Scafidi, S., and Wolfgang, MJ., 2016, "Loss of Adipose Fatty Acid Oxidation Does Not Potentiate Obesity at Thermoneutrality," Cell Rep. 14(6):1308-16.​ PubMed
Bachas, S., Kohr, B., and Wade, H., 2016, "Charge is Major Determinant of Activation of the Ligand-Responsive Multidrug Resistance Gene Regulator," BmrR. C​hemMedChem. ​ PubMed
Shirley, MD., Frelin, L., López, JS., Jedlicka, A., Dziedzic, A., Frank-Crawford, MA., Silverman, W., Hagopian, L., and Pevsner, J., 2016, "Copy Number Variants Associated with 14 Cases of Self-Injurious Behavior," PLoS One. 11(3):e0149646.​ ​ PubMed
Meier, EL., Razavi, S., Inoue, T., and Goley, ED., 2016, "A novel membrane anchor for FtsZ is linked to cell wall hydrolysis in Caulobacter crescentus," Mol Microbiol.​ ​ PubMed
Salvatierra, J. and Bosmans, F., 2016, "A painful tale about synthetic scorpion toxins," Channels (Austin). [Epub ahead of print]​ ​ PubMed​
Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS., and Pomerantz, JL., 2016,  "Correction for Pedersen et al., Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. 36(8):1322.​​ PubMed
Chamling, X., Sluch, VM., and Zack, DJ., 2016, "The Potential of Human Stem Cells for the Study and Treatment of Glaucoma," Invest Ophthalmol Vis Sci. 57(5):ORSFi1-6.​ PubMed
Mitchell, CJ., Kim, MS., Zhong, J., Nirujogi, RS., Bose, AK., and Pandey, A., 2016, "Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans," Mol Oncol.  pii: S1574-7891(16)30010-2.​ PubMed​
Zitouni, S., Francia, ME., Leal, F., Montenegro Gouveia, S., Nabais, C., Duarte, P., Gilberto, S., Brito, D., Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M., Bettencourt-Dias, M., 2016, "CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,"  Curr Biol. pii: S0960-9822(16)30300-1.​ PubMed
Pokorná, L. , Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J., and Balážová, M., 2016, “Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function,” Biochim Biophys Acta. 1857(1):34-45.  PubMed
Lei, X., Rodriguez, S., Petersen, PS., Seldin, MM., Bowman, CE., Wolfgang, MJ., and Wong, GW., 2016, “Loss of CTRP5 improves insulin action and hepatic steatosis,” Am J Physiol Endocrinol Metab. ajpendo.00010.2016. PubMed
Bowman, CE., Zhao, L., Hartung, T., and Wolfgang, MJ., 2016, “Requirement for the Mitochondrial Pyruvate Carrier in Mammalian Development Revealed by a Hypomorphic Allelic Series,” Mol Cell Biol. 36(15):2089-104. PMCID: PMC4946427 PubMed 
Lin, X., Steinberg, S., Kandasamy, SK., Afzal, J., Mbiyangandu, B., Liao, SE., Guan, Y., Corona-Villalobos, CP., Matkovich, SJ.,  Epstein, N., Tripodi, D., Huo, Z., Cutting, G., Abraham, TP., Fukunaga, R., and Abraham, MR., 2016, “Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis," PLoS One. 11(5):e0156065. eCollection 2016.​  PubMed
Pokorná, L., Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J. and Balážová, M., 2016, "Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function," Biochim Biophys Acta. 1857(1):34-45. PMCID: PMC4690203  PubMed

2015

Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, “IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes,” Antivir Ther. 20(8):805-14. PMCID: PMC4821403 PubMed
Kowalinski, E., Schuller, A., Green, R. and Conti, E., 2015, "Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases," Structure, 23(7):1336-43 PMCID: PMC4509514  PubMed
Goodrich, AC., Harden, BJ. and Frueh, DP., 2015, "Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts," J Am Chem Soc. PMID: 26334259​ PubMed
Sun, G. j, Zhou, Y., Ito, S., Bonaguidi, M. a, O’Brien, G. s, Kawasaki, N., Modak, N., Zhu, Y., Ming, G.-L., Song, H., "Latent tri-lineage potential of adult neural stem cells in the hippocampus revealed by Nf1 inactivation", Nature Neuroscience, 2015 Dec;18(12):1722-4. PMID: 26523645 PubMed
Metcalf, Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL. and Blankson, JN., 2015, "A murine viral outgrowth assay to detect residual HIV-1 in patients with undetectable viral loads," J Infect Dis. 212:1387-1396. PMCID: PMC4601916 ​ PubMed
Yoo, SW.*, Motari, MG.*, Susuki, K.*, Prendergast, J.*, Mountney, A.*, Hurtado, A.* and Schnaar, RL., 2015 "Sialylation regulates brain structure and function," FASEB J. 29(7):3040-53. PMCID: PMC4478807 *equal contribution PubMed​
Onguka, O.*, Calzada, E.*, Ogunbona, OB*. and Claypool, SM., 2015, "Phosphatidylserine Decarboxylase 1 Autocatalysis and Function Does Not Require a Mitochondrial-specific Factor," J Biol Chem, 290: 12744-52  PMCID: PMC4432291 *equal contribution PubMed​
Li, Z., He, SQ., Tseng, PY., Xu, Q., Tiwari, V., Yang, F., Shu, B., Zhang, T., Tang, Z., Raja, SN., Wang, Y., Dong, X. and Guan, Y., 2015, "The inhibition of high-voltage-activated calcium current by activation of MrgC11 involves phospholipase C-dependent mechanisms," Neuroscience, 300:393-403. PMCID: PMC4485588  PubMed​
Zhang, W., Wu, J., Ward, MD., Yang, S., Chuang, YA., Xiao, M., Li, R., Leahy, DJ. and Worley, PF., 2015, “Structural basis of arc binding to synaptic proteins: implications for cognitive disease.” Neuron. 22;86(2):490-500. PMCID: PMC4409568 PubMed
Hasan, S., Hétié, P amd Matunis, EL., 2015, "Niche signaling promotes stem cell survival in the Drosophila testis via the JAK-STAT target DIAP1," Dev Biol, 404(1):27-39 PMCID: PMC4469572 PubMed
Morris, M., Knudsen, GM., Maeda, S., Trinidad, JC., Ioanoviciu, A., Burlingame, AL. and Mucke, L., 2015, "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice," Nat Neurosci. 18(8):1183-9. PubMed
Maruotti, J.*, Sripathi, SR.*, Bharti, K.*, Fuller, J.*, Wahlin, KJ.*, Ranganathan, V.*, Sluch, VM.*, Berlinicke, CA.*, Davis, J., Kim, C.*, Zhao, L.*, Wan, J.*, Qian, J.*, Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I.*, Lutty, GA.* and Zack, DJ.*, 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5. PMCID: PMC4568212 *equal contribution PubMed
Westerbeck, JW. and Machamer, CE., 2015, "A Coronavirus E Protein is Present in Two Distinct Pools with Different Effects on Assembly and the Secretory Pathway," J Virol., 89:18.  PMCID: PMC4542375  PubMed
Sun, G. j*, Zhou, Y.*, Stadel, R. p*, Moss, J., Yong, J.H. a, Ito, S., Kawasaki, N. k, Phan, A. t, Oh, J. h, Modak, N., Reed, R. r, Toni, N., Song, H., Ming, G.-L. Tangential migration of neuronal precursors of glutamatergic neurons in the adult mammalian brain. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9484-9 (*equal contributions) PMID: 26170290 PubMed
Moyer, TC., Clutario, KM., Lambrus, BG., Daggubati, V. and Holland, AJ., 2015, "Binding of STIL to Plk4 activates kinase activity to promote centriole assembly," J Cell Biol. 209(6):863-78. PMCID: PMC4477857  PubMed
Dancy, BM. and Cole, PA., 2015, "Protein Lysine Acetylation by p300/CBP," Chem Rev, 115(6):2419-52. PMCID: PMC4378506 PubMed
Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., and Chen, X., 2015, "An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation," Cell Rep. 13(2):315-25. PMCID: PMC4607668 PubMed
Subramanian, M., Timmerman, CK., Schwartz, J.L., Pham, DL. and Meffert, MK., 2015, "Characterizing autism spectrum disorders by key biochemical pathways," Front Neurosci. 9:313.  Review. PMCID: PMC4586332 . PubMed
Lambrus, BG., Uetake, Y., Clutario, KM., Daggubati, V., Snyder, M., Sluder, G. and Holland, AJ., 2015, "p53 protects against genome instability following centriole duplication failure," J Cell Biol., 210(1):63-77. PMCID: PMC4494000  PubMed
Hobbs, RP.*, DePianto, DJ.*, Jacob, JT.*, Han, MC.*, Chung, BM.*, Batazzi, AS.*, Poll, BG.*, Guo, Y.*, Han,* J., Ong, S.*, Zheng, W., Taube, JM., Čiháková, D., Wan, F. and Coulombe, PA. 2015, "Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes," Nat Genet. 47(8):933-8. PMCID: PMC4520766 *equal contribution ​PubMed​
Margolis, SS., Sell, GL., Zbinden, MA., and Bird, LM., 2015, "Angelman Syndrome," Neurotherapeutics. 12(3):641-50.​ ​ PubMed
Mohammad, F., Woolstenhulme, CJ., Green, R., and Buskirk, AR., 2015, "Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling," Cell Rep. pii: S2211-1247(15)01529-6.​  PubMed
Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL., and Blankson, JN., 2015, "A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads," J Infect Dis. 212(9):1387-96. PubMed
de la Peña, AH., Suarez, A., Duong-Ly, KC., Schoeffield, AJ., Pizarro-Dupuy, MA., Zarr, M., Pineiro, SA., Amzel, LM. and Gabelli, SB., 2015, "Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus," PLoS One, PMID: 26524597 PubMed
Baras, AS., Mitchell, CJ., Myers, JR., Gupta, S., Weng, LC., Ashton, JM., Cornish, TC., Pandey, A. and  Halushka, MK., 2015, "miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy," PLoS One. PMID: 26571139  PubMed
Phua, SC., Lin, YC. and Inoue, T., 2015, "An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli," Cell Calcium. 58(4):415-22. Review. PMID: 25828566 PubMed​
Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., Chen, X., 2015, An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation. Cell Rep. 13(2):315-25. PMID: 26440886  PubMed

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