Recent Publications

2016

Bachas, S., Kohr, B., and Wade, H., 2016, "Charge is Major Determinant of Activation of the Ligand-Responsive Multidrug Resistance Gene Regulator," BmrR. C​hemMedChem. ​ PubMed
Shirley, MD., Frelin, L., López, JS., Jedlicka, A., Dziedzic, A., Frank-Crawford, MA., Silverman, W., Hagopian, L., and Pevsner, J., 2016, "Copy Number Variants Associated with 14 Cases of Self-Injurious Behavior," PLoS One. 11(3):e0149646.​ ​ PubMed
Meier, EL., Razavi, S., Inoue, T., and Goley, ED., 2016, "A novel membrane anchor for FtsZ is linked to cell wall hydrolysis in Caulobacter crescentus," Mol Microbiol.​ ​ PubMed
Salvatierra, J. and Bosmans, F., 2016, "A painful tale about synthetic scorpion toxins," Channels (Austin). [Epub ahead of print]​ ​ PubMed​
Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS., and Pomerantz, JL., 2016,  "Correction for Pedersen et al., Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. 36(8):1322.​​ PubMed
Chamling, X., Sluch, VM., and Zack, DJ., 2016, "The Potential of Human Stem Cells for the Study and Treatment of Glaucoma," Invest Ophthalmol Vis Sci. 57(5):ORSFi1-6.​ PubMed
Mitchell, CJ., Kim, MS., Zhong, J., Nirujogi, RS., Bose, AK., and Pandey, A., 2016, "Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans," Mol Oncol.  pii: S1574-7891(16)30010-2.​ PubMed​
Zitouni, S., Francia, ME., Leal, F., Montenegro Gouveia, S., Nabais, C., Duarte, P., Gilberto, S., Brito, D., Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M., Bettencourt-Dias, M., 2016, "CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,"  Curr Biol. pii: S0960-9822(16)30300-1.​ PubMed
Pokorná, L. , Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J., and Balážová, M., 2016, “Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function,” Biochim Biophys Acta. 1857(1):34-45.  PubMed
Lei, X., Rodriguez, S., Petersen, PS., Seldin, MM., Bowman, CE., Wolfgang, MJ., and Wong, GW., 2016, “Loss of CTRP5 improves insulin action and hepatic steatosis,” Am J Physiol Endocrinol Metab. ajpendo.00010.2016. PubMed
Bowman, CE., Zhao, L., Hartung, T., and Wolfgang, MJ., 2016, “Requirement for the Mitochondrial Pyruvate Carrier in Mammalian Development Revealed by a Hypomorphic Allelic Series,” Mol Cell Biol. 36(15):2089-104. PMCID: PMC4946427 PubMed 
Lin, X., Steinberg, S., Kandasamy, SK., Afzal, J., Mbiyangandu, B., Liao, SE., Guan, Y., Corona-Villalobos, CP., Matkovich, SJ.,  Epstein, N., Tripodi, D., Huo, Z., Cutting, G., Abraham, TP., Fukunaga, R., and Abraham, MR., 2016, “Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis," PLoS One. 11(5):e0156065. eCollection 2016.​  PubMed
Pokorná, L., Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J. and Balážová, M., 2016, "Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function," Biochim Biophys Acta. 1857(1):34-45. PMCID: PMC4690203  PubMed

2015

Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, “IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes,” Antivir Ther. 20(8):805-14. PMCID: PMC4821403 PubMed
Kowalinski, E., Schuller, A., Green, R. and Conti, E., 2015, "Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases," Structure, 23(7):1336-43 PMCID: PMC4509514  PubMed
Cheng, YL. and Andrew, DJ., 2015, "Extracellular Mipp1 Activity Confers Migratory Advantage to Epithelial Cells during Collective Migration," Cell Rep. 13(10):2174-88. PMCID: PMC4776642. PubMed
Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk. EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams. RJ., Zink, MC., Clements, JE., Mankowski, JL. and Blankson, JN., 2015, "A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads," J Infect Dis. 212(9):1387-96.  PMCID: PMC4601916. PubMed
Goodrich, AC., Harden, BJ. and Frueh, DP., 2015, "Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts," J Am Chem Soc. PMID: 26334259​ PubMed
Sun, G. j, Zhou, Y., Ito, S., Bonaguidi, M. a, O’Brien, G. s, Kawasaki, N., Modak, N., Zhu, Y., Ming, G.-L., Song, H., "Latent tri-lineage potential of adult neural stem cells in the hippocampus revealed by Nf1 inactivation", Nature Neuroscience, 2015 Dec;18(12):1722-4. PMID: 26523645 PubMed
Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, "Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina," PLoS One. 10(12):e0143650.​ ​ PubMed
Wong, X. and Reddy, KL., 2015, "Finding the Middlemen in Genome Organization," Dev Cell. 35(6):670-1.​​ PubMed
Lin, Q., Jia, B., Mitchell, LA., Luo, J., Yang, K., Zeller, KI., Zhang, W., Xu, Z., Stracquadanio, G., Bader, JS., Boeke, JD., and Yuan, YJ., 2015, "RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae," ACS Synth Biol. 4(3):213-20.​ ​ PubMed​
Shamir, ER. and Ewald, AJ., 2015, "Adhesion in mammary development: novel roles for E-cadherin in individual and collective cell migration," Curr Top Dev Biol. 112:353-82.​ ​ PubMed​
Maruotti, J., Sripathi, SR., Bharti, K., Fuller, J., Wahlin, KJ., Ranganathan, V., Sluch, VM., Berlinicke, CA., Davis, J., Kim, C., Zhao, L., Wan, J., Qian, J., Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I., Lutty, GA., and Zack, DJ., 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5.​ PubMed
Riestra, AM., Gandhi, S., Sweredoski, MJ., Moradian, A., Hess, S., Urban, S., and Johnson, PJ., 2015, "A Trichomonas vaginalis Rhomboid Protease and Its Substrate Modulate Parasite Attachment and Cytolysis of Host Cells," PLoS Pathog. 11(12):e1005294.​ PubMed
Moore,CD.*, Ajala, OZ.* and Zhu, H., 2015, "Applications in high-content functional protein microarrays," Curr Opin Chem Biol. 30:21-27.  Review. *equal contribution PubMed
Prasad, M., Wang, X., He, L., Cai, D., and Montell, DJ., 2015, “Border Cell Migration: A Model System for Live Imaging and Genetic Analysis of Collective Cell Movement,”  Methods Mol Biol. 1328:89-97.  PubMed
de la Peña, AH., Suarez, A., Duong-Ly, KC., Schoeffield, AJ., Pizarro-Dupuy, MA., Zarr, M., Pineiro, SA., Amzel, LM. and Gabelli, SB., 2015, "Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus," PLoS One, PMID: 26524597 PubMed
Baras, AS., Mitchell, CJ., Myers, JR., Gupta, S., Weng, LC., Ashton, JM., Cornish, TC., Pandey, A. and  Halushka, MK., 2015, "miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy," PLoS One. PMID: 26571139  PubMed
Mitchell, CJ., Getnet, D., Kim, MS., Manda, SS., Kumar, P., Huang, TC., Pinto, SM., Nirujogi, RS., Iwasaki, M., Shaw, PG., Wu, X., Zhong, J., Chaerkady, R., Marimuthu, A., Muthusamy, B., Sahasrabuddhe, NA., Raju, R., Bowman, C., Danilova, L., Cutler, J., Kelkar, DS., Drake, CG., Prasad, TS., Marchionni, L., Murakami, PN., Scott, AF., Shi, L., Thierry-Mieg, J., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. and Pandey, A., 2015, "A multi-omic analysis of human naïve CD4+ T cells," BMC Syst Biol. 9:75. PMID: 26542228 PubMed
Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, "Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina," PLoS One. 10(12):e0143650. PMID: 26630461 PubMed
Lee, CF., Lo, YC., Cheng, CH., Furtmüller, GJ., Oh, B., Andrade-Oliveira, V., Thomas, AG., Bowman, CE., Slusher, BS., Wolfgang, MJ., Brandacher, G., Powell, JD., 2015, "Preventing Allograft Rejection by Targeting Immune Metabolism," Cell Rep. 13(4):760-70. PMID: 26489460 PubMed
Moyer, TC. and Holland, AJ., 2015, "Generation of a conditional analog-sensitive kinase in human cells using CRISPR/Cas9-mediated genome engineering," Methods Cell Biol. 129:19-36.​ ​ PubMed​
Li, Z., He, SQ., Tseng, PY., Xu, Q., Tiwari, V., Yang, F., Shu, B., Zhang, T., Tang, Z., Raja, SN., Wang, Y., Dong, X. and Guan, Y., 2015, "The inhibition of high-voltage-activated calcium current by activation of MrgC11 involves phospholipase C-dependent mechanisms," Neuroscience, 300:393-403. PMCID: PMC4485588  PubMed​
Zhang, W., Wu, J., Ward, MD., Yang, S., Chuang, YA., Xiao, M., Li, R., Leahy, DJ. and Worley, PF., 2015, “Structural basis of arc binding to synaptic proteins: implications for cognitive disease.” Neuron. 22;86(2):490-500. PMCID: PMC4409568 PubMed
Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, "IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes," Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknownPubMed
Echeverria, I., Liu, Y., Gabelli, SB. and Amzel, LM., 2015, "PI3Kα oncogenic mutations weaken the interactions that stabilize the p110α/p85α heterodimer," FEBS J., 282(18):3528-42  PMCID: PMC4573839  PubMed
Hasan, S., Hétié, P amd Matunis, EL., 2015, "Niche signaling promotes stem cell survival in the Drosophila testis via the JAK-STAT target DIAP1," Dev Biol, 404(1):27-39 PMCID: PMC4469572 PubMed
Morris, M., Knudsen, GM., Maeda, S., Trinidad, JC., Ioanoviciu, A., Burlingame, AL. and Mucke, L., 2015, "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice," Nat Neurosci. 18(8):1183-9. PubMed
Maruotti, J.*, Sripathi, SR.*, Bharti, K.*, Fuller, J.*, Wahlin, KJ.*, Ranganathan, V.*, Sluch, VM.*, Berlinicke, CA.*, Davis, J., Kim, C.*, Zhao, L.*, Wan, J.*, Qian, J.*, Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I.*, Lutty, GA.* and Zack, DJ.*, 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5. PMCID: PMC4568212 *equal contribution PubMed
Westerbeck, JW. and Machamer, CE., 2015, "A Coronavirus E Protein is Present in Two Distinct Pools with Different Effects on Assembly and the Secretory Pathway," J Virol., 89:18.  PMCID: PMC4542375  PubMed
Sun, G. j*, Zhou, Y.*, Stadel, R. p*, Moss, J., Yong, J.H. a, Ito, S., Kawasaki, N. k, Phan, A. t, Oh, J. h, Modak, N., Reed, R. r, Toni, N., Song, H., Ming, G.-L. Tangential migration of neuronal precursors of glutamatergic neurons in the adult mammalian brain. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9484-9 (*equal contributions) PMID: 26170290 PubMed
Moyer, TC., Clutario, KM., Lambrus, BG., Daggubati, V. and Holland, AJ., 2015, "Binding of STIL to Plk4 activates kinase activity to promote centriole assembly," J Cell Biol. 209(6):863-78. PMCID: PMC4477857  PubMed
Vanhollebeke, B., Stone, OA., Bostaille, N., Cho, C., Zhou, Y., Maquet, E., Gauquier, A., Cabochette, P., Fukuhara, S., Mochizuki, N., Nathans and J. and Stainier, DY., 2015, "Tip cell-specific requirement for an atypical Gpr124- and Reck-dependent Wnt/β-catenin pathway during brain angiogenesis," Elife. 4. PMCID: PMC4456509 PubMed
Durand, CM., Buckheit, RW 3rd., Salgado, M., Pohlmeyer, CW., Walker-Sperling, VE., Hegarty, RW., Ambinder, RF. and Blankson, JN., 2015, "A Human Immunodeficiency Virus Controller With a Large Population of CD4(+)CD8(+) Double-Positive T Cells," Open Forum Infect Dis. 2(2):ofv039. PMCID: PMC4567082 PubMed
Hanlon, C.D. and Andrew, D.J., 2015, "Outside – In Signaling: a review of the Drosophila GPCR family," J Cell Sci. 2015 Oct 1;128(19):3533-42. Review. PMCID: PMC4610211 .PubMed
Julian, TR., Baugher, JD., Rippinger, C., Pinekenstein, R., Kolawole, AO., Mehoke, T., Wobus, CE., Feldman, A., Pineda, FJ. and Schwab, KJ., 2015, "Murine norovirus (MNV-1) exposure in vitro to the purine nucleoside analog Ribavirin increases quasispecies diversity," Virus Res, 211:165-73.      [PubMed - in process] PubMed​
Morris, M., Knudsen, GM., Maeda, S., Trinidad, JC., Ioanoviciu, A., Burlingame, AL. and Mucke, L., 2015, "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice," Nat Neurosci. 18(8):1183-9.   PubMed
Nguyen-Ngoc, KV., Shamir, ER., Huebner, RJ., Beck, JN., Cheung, KJ. and Ewald, AJ., 2015, "3D culture assays of murine mammary branching morphogenesis and epithelial invasion," Methods Mol Biol. 1189:135-62.  PubMed​
Li,  W., Koutmou, KS., Leahy, DJ. and Li, M., 2015, "Systemic RNA Interference Deficiency-1 (SID-1) Extracellular Domain Selectively Binds Long Double-stranded RNA and Is Required for RNA Transport by SID-1.," J Biol Chem. 290(31):18904-13. PMCID: PMC4521010 PubMed

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