Recent Publications

2015

Zhang, W., Wu, J., Ward, MD., Yang, S., Chuang, YA., Xiao, M., Li, R., Leahy, DJ. and Worley, PF., 2015, “Structural basis of arc binding to synaptic proteins: implications for cognitive disease.” Neuron. 22;86(2):490-500. PMCID: PMC4409568 PubMed
Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, "IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes," Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknownPubMed
Echeverria, I., Liu, Y., Gabelli, SB. and Amzel, LM., 2015, "PI3Kα oncogenic mutations weaken the interactions that stabilize the p110α/p85α heterodimer," FEBS J., 282(18):3528-42  PMCID: PMC4573839  PubMed
Hasan, S., Hétié, P amd Matunis, EL., 2015, "Niche signaling promotes stem cell survival in the Drosophila testis via the JAK-STAT target DIAP1," Dev Biol, 404(1):27-39 PMCID: PMC4469572 PubMed
Morris, M., Knudsen, GM., Maeda, S., Trinidad, JC., Ioanoviciu, A., Burlingame, AL. and Mucke, L., 2015, "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice," Nat Neurosci. 18(8):1183-9. PubMed
Maruotti, J.*, Sripathi, SR.*, Bharti, K.*, Fuller, J.*, Wahlin, KJ.*, Ranganathan, V.*, Sluch, VM.*, Berlinicke, CA.*, Davis, J., Kim, C.*, Zhao, L.*, Wan, J.*, Qian, J.*, Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I.*, Lutty, GA.* and Zack, DJ.*, 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5. PMCID: PMC4568212 *equal contribution PubMed
Westerbeck, JW. and Machamer, CE., 2015, "A Coronavirus E Protein is Present in Two Distinct Pools with Different Effects on Assembly and the Secretory Pathway," J Virol., 89:18.  PMCID: PMC4542375  PubMed
Sun, G. j*, Zhou, Y.*, Stadel, R. p*, Moss, J., Yong, J.H. a, Ito, S., Kawasaki, N. k, Phan, A. t, Oh, J. h, Modak, N., Reed, R. r, Toni, N., Song, H., Ming, G.-L. Tangential migration of neuronal precursors of glutamatergic neurons in the adult mammalian brain. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9484-9 (*equal contributions) PMID: 26170290 PubMed
Moyer, TC., Clutario, KM., Lambrus, BG., Daggubati, V. and Holland, AJ., 2015, "Binding of STIL to Plk4 activates kinase activity to promote centriole assembly," J Cell Biol. 209(6):863-78. PMCID: PMC4477857  PubMed
Vanhollebeke, B., Stone, OA., Bostaille, N., Cho, C., Zhou, Y., Maquet, E., Gauquier, A., Cabochette, P., Fukuhara, S., Mochizuki, N., Nathans and J. and Stainier, DY., 2015, "Tip cell-specific requirement for an atypical Gpr124- and Reck-dependent Wnt/β-catenin pathway during brain angiogenesis," Elife. 4. PMCID: PMC4456509 PubMed
Durand, CM., Buckheit, RW 3rd., Salgado, M., Pohlmeyer, CW., Walker-Sperling, VE., Hegarty, RW., Ambinder, RF. and Blankson, JN., 2015, "A Human Immunodeficiency Virus Controller With a Large Population of CD4(+)CD8(+) Double-Positive T Cells," Open Forum Infect Dis. 2(2):ofv039. PMCID: PMC4567082 PubMed
Hanlon, C.D. and Andrew, D.J., 2015, "Outside – In Signaling: a review of the Drosophila GPCR family," J Cell Sci. 2015 Oct 1;128(19):3533-42. Review. PMCID: PMC4610211 .PubMed
Julian, TR., Baugher, JD., Rippinger, C., Pinekenstein, R., Kolawole, AO., Mehoke, T., Wobus, CE., Feldman, A., Pineda, FJ. and Schwab, KJ., 2015, "Murine norovirus (MNV-1) exposure in vitro to the purine nucleoside analog Ribavirin increases quasispecies diversity," Virus Res, 211:165-73.      [PubMed - in process] PubMed​
Morris, M., Knudsen, GM., Maeda, S., Trinidad, JC., Ioanoviciu, A., Burlingame, AL. and Mucke, L., 2015, "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice," Nat Neurosci. 18(8):1183-9.   PubMed
Nguyen-Ngoc, KV., Shamir, ER., Huebner, RJ., Beck, JN., Cheung, KJ. and Ewald, AJ., 2015, "3D culture assays of murine mammary branching morphogenesis and epithelial invasion," Methods Mol Biol. 1189:135-62.  PubMed​
Li,  W., Koutmou, KS., Leahy, DJ. and Li, M., 2015, "Systemic RNA Interference Deficiency-1 (SID-1) Extracellular Domain Selectively Binds Long Double-stranded RNA and Is Required for RNA Transport by SID-1.," J Biol Chem. 290(31):18904-13. PMCID: PMC4521010 PubMed
Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., and Chen, X., 2015, "An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation," Cell Rep. 13(2):315-25. PMCID: PMC4607668 PubMed
Subramanian, M., Timmerman, CK., Schwartz, J.L., Pham, DL. and Meffert, MK., 2015, "Characterizing autism spectrum disorders by key biochemical pathways," Front Neurosci. 9:313.  Review. PMCID: PMC4586332 . PubMed
Lambrus, BG., Uetake, Y., Clutario, KM., Daggubati, V., Snyder, M., Sluder, G. and Holland, AJ., 2015, "p53 protects against genome instability following centriole duplication failure," J Cell Biol., 210(1):63-77. PMCID: PMC4494000  PubMed
Hobbs, RP.*, DePianto, DJ.*, Jacob, JT.*, Han, MC.*, Chung, BM.*, Batazzi, AS.*, Poll, BG.*, Guo, Y.*, Han,* J., Ong, S.*, Zheng, W., Taube, JM., Čiháková, D., Wan, F. and Coulombe, PA. 2015, "Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes," Nat Genet. 47(8):933-8. PMCID: PMC4520766 *equal contribution ​PubMed​
Moore,CD.*, Ajala, OZ.* and Zhu, H., 2015, "Applications in high-content functional protein microarrays," Curr Opin Chem Biol. 30:21-27.  Review. *equal contribution PubMed
Mitchell, CJ., Kim, MS., Na, CH., and Pandey, A., 2015, ” PyQuant: a versatile framework for analysis of quantitative mass spectrometry data,” Mol Cell Proteomics. pii: mcp.O115.056879  PubMed​
Prasad, M., Wang, X., He, L., Cai, D., and Montell, DJ., 2015, “Border Cell Migration: A Model System for Live Imaging and Genetic Analysis of Collective Cell Movement,”  Methods Mol Biol. 1328:89-97.  PubMed
Moyer, TC. and Holland, AJ., 2015, "Generation of a conditional analog-sensitive kinase in human cells using CRISPR/Cas9-mediated genome engineering," Methods Cell Biol. 129:19-36.​ ​ PubMed​
Echeverria, I., Liu, Y., Gabelli, SB., and Amzel, LM., 2015, "Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α," FEBS J. 282(18):3528-42.​ PubMed
Riestra, AM., Gandhi, S., Sweredoski, MJ., Moradian, A., Hess, S., Urban, S., and Johnson, PJ., 2015, "A Trichomonas vaginalis Rhomboid Protease and Its Substrate Modulate Parasite Attachment and Cytolysis of Host Cells," PLoS,"  Pathog. 11(12):e1005294.​ PubMed
Wong, X. and Reddy, KL., 2015,  "Finding the Middlemen in Genome Organization," Dev Cell. 35(6):670-1.​ PubMed
Margolis, SS., Sell, GL., Zbinden, MA., and Bird, LM., 2015, "Angelman Syndrome," Neurotherapeutics. 12(3):641-50.​ ​ PubMed
Lee, J., Choi, J., Wong, GW., and Wolfgang, MJ., "Neurometabolic roles of ApoE and Ldl-R in mouse brain," J Bioenerg Biomembr. ​ PubMed
Ellis, JM., Bowman, CE. and Wolfgang, MJ., 2015, "Metabolic and tissue-specific regulation of acyl-CoA metabolism," PLoS One. 10(3):e0116587.​ ​ PubMed
Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, "Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina," PLoS One. 10(12):e0143650.​ ​ PubMed
Wong, X. and Reddy, KL., 2015, "Finding the Middlemen in Genome Organization," Dev Cell. 35(6):670-1.​​ PubMed
Lin, Q., Jia, B., Mitchell, LA., Luo, J., Yang, K., Zeller, KI., Zhang, W., Xu, Z., Stracquadanio, G., Bader, JS., Boeke, JD., and Yuan, YJ., 2015, "RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae," ACS Synth Biol. 4(3):213-20.​ ​ PubMed​
Shamir, ER. and Ewald, AJ., 2015, "Adhesion in mammary development: novel roles for E-cadherin in individual and collective cell migration," Curr Top Dev Biol. 112:353-82.​ ​ PubMed​
Maruotti, J., Sripathi, SR., Bharti, K., Fuller, J., Wahlin, KJ., Ranganathan, V., Sluch, VM., Berlinicke, CA., Davis, J., Kim, C., Zhao, L., Wan, J., Qian, J., Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I., Lutty, GA., and Zack, DJ., 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5.​ PubMed
Riestra, AM., Gandhi, S., Sweredoski, MJ., Moradian, A., Hess, S., Urban, S., and Johnson, PJ., 2015, "A Trichomonas vaginalis Rhomboid Protease and Its Substrate Modulate Parasite Attachment and Cytolysis of Host Cells," PLoS Pathog. 11(12):e1005294.​ PubMed
Yuan, G., Vasavda, C., Peng, YJ., Makarenko, VV., Raghuraman, G., Nanduri, J., Gadalla, MM., Semenza, GL., Kumar, GK., Snyder, SH. and Prabhakar, NR., 2015, "Protein kinase G-regulated production of H2S governs oxygen sensing," Sci Signal. 8(373):ra37. PubMed​
Mohammad, F., Woolstenhulme, CJ., Green, R., and Buskirk, AR., 2015, "Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling," Cell Rep. pii: S2211-1247(15)01529-6.​  PubMed
Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL., and Blankson, JN., 2015, "A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads," J Infect Dis. 212(9):1387-96. PubMed
Nguyen-Ngoc, KV., Shamir, ER., Huebner, RJ., Beck, JN., Cheung, KJ. and Ewald, AJ., 2015, "3D culture assays of murine mammary branching morphogenesis and epithelial invasion," Methods Mol Biol. 1189:135-62. ​ PubMed

2014

Zhang, H., Zou, B., Du, F., Xu, K. and Li, M., 2014, "Reporting Sodium Channel Activity using Calcium Flux: Pharmacological Promiscuity of Cardiac Nav1.5," Mol Pharmacol.87(2):207-17  PMCID: PMC4293450 PubMed
Van den Elzen, A.M.G., Schuller, A., Green, R. and Séraphin, B., 2014, "Dom34-Hbs1 mediated dissociation of inactive 80S ribosomes promotes restart of translation after stress.," EMBO J. 33, 265-276 (2014). PMCID: PMC3989619 ​PubMed
Davis, C.-H.O., Kim, K.-Y., Bushong, E. a, Mills, E. a, Boassa, D., Shih, T., Kinebuchi, M., Phan, S., Zhou, Y., Bihlmeyer, N. a, Nguyen, J.V., Jin, Y., Ellisman, M.H., Marsh-Armstrong, N., "Transcellular degradation of axonal mitochondria", Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9633-8. PMID: 24979790 PubMed
Wang, JT. and Seydoux, G., 2014, "P granules," Curr Biol. 24(14):R637-8. PubMed
Li, Z., He, SQ., Xu, Q., Yang, F., Tiwari, V., Liu, Q., Tang, Z., Han, L., Chu, YX., Wang, Y., Hin, N., Tsukamoto, T., Slusher, B., Guan, X., Wei, F., Raja, SN., Dong, X. and Guan, Y., 2014, "Activation of MrgC receptor inhibits N-type calcium channels in small-diameter primary sensory neurons in mice," Pain, 155(8):1613-21. PMCID: PMC4104261  PubMed
Kelkar, DS., Provost, E., Chaerkady, R., Muthusamy, B., Manda, SS., Subbannayya, T., Selvan, LD., Wang, CH., Datta, KK., Woo, S., Dwivedi, SB., Renuse, S., Getnet, D., Huang, TC., Kim, MS.,, Pinto, SM., Mitchell, CJ., Madugundu, AK., Kumar, P., Sharma, J., Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Keshava Prasad, TS., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, SD. and Pandey, A., 2014, "Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis," Mol Cell Proteomics. 13(11):3184-98. PMCID: PMC4223501 PubMed
Debeljak, M., Freed, DN., Welch, JA., Haley, L., Beierl, K., Iglehart, BS., Pallavajjala, A., Gocke, CD., Leffell, MS., Lin, MT., Pevsner, J., Wheelan, SJ and Eshleman, JR., 2014, "Haplotype counting by next-generation sequencing for ultrasensitive human DNA detection," J Mol Diagn. 16(5):495-503.     PubMed.​
Kavran, JM., McCabe, JM., Byrne, PO., Connacher, MK., Wang, Z., Ramek, A., Sarabipour, S., Shan, Y., Shaw, DE., Hristova, K., Cole, PA., and Leahy, DJ., 2014, "How IGF-1 activates its receptor," Elife. 3.​ PubMed
Schaughency, P., Merran, J., and Corden, JL., 2014, "Genome-wide mapping of yeast RNA polymerase II termination," PLoS Genet. 10(10):e1004632.​ PubMed
Bruner, JK., Zou, B., Zhang, H., Zhang, Y., Schmidt, K., and Li, M., 2014, "Identification of novel small molecule modulators of K2P18.1 two-pore potassium channel," Eur J Pharmacol. 740:603-10.  PubMed

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