Recent Publications

2016

Meier, EL., Razavi, S., Inoue, T., and Goley, ED., 2016, "A novel membrane anchor for FtsZ is linked to cell wall hydrolysis in Caulobacter crescentus," Mol Microbiol.​ ​ PubMed
Salvatierra, J. and Bosmans, F., 2016, "A painful tale about synthetic scorpion toxins," Channels (Austin). [Epub ahead of print]​ ​ PubMed​
Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS., and Pomerantz, JL., 2016,  "Correction for Pedersen et al., Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. 36(8):1322.​​ PubMed
Chamling, X., Sluch, VM., and Zack, DJ., 2016, "The Potential of Human Stem Cells for the Study and Treatment of Glaucoma," Invest Ophthalmol Vis Sci. 57(5):ORSFi1-6.​ PubMed
Mitchell, CJ., Kim, MS., Zhong, J., Nirujogi, RS., Bose, AK., and Pandey, A., 2016, "Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans," Mol Oncol.  pii: S1574-7891(16)30010-2.​ PubMed​
Zitouni, S., Francia, ME., Leal, F., Montenegro Gouveia, S., Nabais, C., Duarte, P., Gilberto, S., Brito, D., Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M., Bettencourt-Dias, M., 2016, "CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,"  Curr Biol. pii: S0960-9822(16)30300-1.​ PubMed
Lei, X., Rodriguez, S., Petersen, PS., Seldin, MM., Bowman, CE., Wolfgang, MJ., and Wong, GW., 2016, “Loss of CTRP5 improves insulin action and hepatic steatosis,” Am J Physiol Endocrinol Metab. ajpendo.00010.2016. PubMed
Bowman, CE., Zhao, L., Hartung, T., and Wolfgang, MJ., 2016, “Requirement for the Mitochondrial Pyruvate Carrier in Mammalian Development Revealed by a Hypomorphic Allelic Series,” Mol Cell Biol. 36(15):2089-104. PMCID: PMC4946427 PubMed 
Lin, X., Steinberg, S., Kandasamy, SK., Afzal, J., Mbiyangandu, B., Liao, SE., Guan, Y., Corona-Villalobos, CP., Matkovich, SJ.,  Epstein, N., Tripodi, D., Huo, Z., Cutting, G., Abraham, TP., Fukunaga, R., and Abraham, MR., 2016, “Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis," PLoS One. 11(5):e0156065. eCollection 2016.​  PubMed
Pokorná, L., Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J. and Balážová, M., 2016, "Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function," Biochim Biophys Acta. 1857(1):34-45. PMCID: PMC4690203  PubMed
Mitchell, CJ., Kim, MS., Na, CH., and Pandey, A., 2016, ” PyQuant: a versatile framework for analysis of quantitative mass spectrometry data,” Mol Cell Proteomics. pii: mcp.O115.056879  15(8):2829-38. PMCID: PMC4974355  PubMed​
Lee, J., Choi, J., Wong, GW., and Wolfgang, MJ., 2016, "Neurometabolic roles of ApoE and Ldl-R in mouse brain," J Bioenerg Biomembr. ​48(1):13-21. PMCID: PMC4733629  PubMed

2015

Maruotti, J., Sripathi, SR., Bharti, K., Fuller, J., Wahlin, KJ., Ranganathan, V., Sluch, VM., Berlinicke, CA., Davis, J., Kim, C., Zhao, L., Wan, J., Qian, J., Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I., Lutty, GA., and Zack, DJ., 2015, "Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells," Proc Natl Acad Sci U S A. 112(35):10950-5.​ PMCID: PMC4568212  PubMed
Lin, Q., Jia, B., Mitchell, LA., Luo, J., Yang, K., Zeller, KI., Zhang, W., Xu, Z., Stracquadanio, G., Bader, JS., Boeke, JD., and Yuan, YJ., 2015, "RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae," ACS Synth Biol. 4(3):213-20.​ PubMed
Clister, T., Mehta, S. and Zhang, J., 2015, "Single-cell Analysis of G-protein Signal Transduction," J Biol Chem, 290(11):6681-8. PMCID: PMC4358091 PubMed  
Greenspan, LJ., de Cuevas, M. and Matunis, E., 2015, "Genetics of Gonadal Stem Cell Renewal," Annu Rev Cell Dev Biol,31:291-315  PMCID: PMC4659427 PubMed  
Garcia-Gonzalo FR*, Phua SC*, Roberson EC, Garcia III G, Abedin M, Schurmans S, Inoue T, Reiter JF. 2015. Phosphoinositides Regulate Ciliary Protein Trafficking to Modulate Hedgehog Signaling. Developmental Cell. 34: 400-409. (*co-first authors) PMCID: PMC4557815 PubMed  
Phua, SC., Lin, YC. and Inoue, T., 2015, "An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli," Cell Calcium, 58: 415-422, Review. PMCID: PMC4564334 [Available on 2016-10-01] PubMed  
Koutmou, KS., Schuller, AP., Brunelle, JL., Radhakrishnan, A., Djuranovic, S. and Green, R., 2015, "Ribosomes slide on lysine-encoding homopolymeric A stretches," Elife, 4: e05534. PMCID: PMC4363877 PubMed  
Goodrich, AC. and Frueh, DP., 2015, "A Nuclear Magnetic Resonance Method for Probing Molecular Influences of Substrate Loading in Nonribosomal Peptide Synthetase Carrier Proteins. Biochemistry, 54, 1154-6.  PMCID: PMC4378656 PubMed  
Lu, YW. and Claypool, SM., 2015, "Disorders of phospholipid metabolism: an emerging class of mitochondrial disease due to defects in nuclear genes," Front Genet. 2015 Feb 3;6:3 PMCID: PMC4315098 PubMed
Kowalinski, E., Schuller, A., Green, R. and Conti, E., 2015, "Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases," Structure, 23(7):1336-43 PMCID: PMC4509514  PubMed
Sluch, VM., Davis, CH., Ranganathan, V., Kerr, JM., Krick, K., Martin, R., Berlinicke, CA., Marsh-Armstrong, N., Diamond, JS., Mao, HQ. and Zack, DJ., 2015, “Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line,” Sci Rep. 5:16595. PMCID: PMC4643248 PubMed
Cheng, YL. and Andrew, DJ., 2015, "Extracellular Mipp1 Activity Confers Migratory Advantage to Epithelial Cells during Collective Migration," Cell Rep. 13(10):2174-88. PMCID: PMC4776642. PubMed
Goodrich, AC., Harden, BJ. and Frueh, DP., 2015, "Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts," J Am Chem Soc. PMID: 26334259​ PubMed
Sun, G. j, Zhou, Y., Ito, S., Bonaguidi, M. a, O’Brien, G. s, Kawasaki, N., Modak, N., Zhu, Y., Ming, G.-L., Song, H., "Latent tri-lineage potential of adult neural stem cells in the hippocampus revealed by Nf1 inactivation", Nature Neuroscience, 2015 Dec;18(12):1722-4. PMID: 26523645 PubMed
Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, "IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes," Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknownPubMed
Hasan, S., Hétié, P amd Matunis, EL., 2015, "Niche signaling promotes stem cell survival in the Drosophila testis via the JAK-STAT target DIAP1," Dev Biol, 404(1):27-39 PMCID: PMC4469572 PubMed
Westerbeck, JW. and Machamer, CE., 2015, "A Coronavirus E Protein is Present in Two Distinct Pools with Different Effects on Assembly and the Secretory Pathway," J Virol., 89:18.  PMCID: PMC4542375  PubMed
Sun, G. J, Zhou, Y., Stadel, R. P, Moss, J., Yong, J.H. A, Ito, S., Kawasaki, N. K, Phan, A. T, Oh, J. H, Modak, N., Reed, R. R, Toni, N., Song, H., Ming, G.-L. Tangential migration of neuronal precursors of glutamatergic neurons in the adult mammalian brain. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9484-9 PMID: 26170290 PubMed
Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., and Chen, X., 2015, "An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation," Cell Rep. 13(2):315-25. PMCID: PMC4607668 PubMed
Subramanian, M., Timmerman, CK., Schwartz, J.L., Pham, DL. and Meffert, MK., 2015, "Characterizing autism spectrum disorders by key biochemical pathways," Front Neurosci. 9:313.  Review. PMCID: PMC4586332 . PubMed
Lambrus, BG., Uetake, Y., Clutario, KM., Daggubati, V., Snyder, M., Sluder, G. and Holland, AJ., 2015, "p53 protects against genome instability following centriole duplication failure," J Cell Biol., 210(1):63-77. PMCID: PMC4494000  PubMed
Hobbs, RP., DePianto, DJ., Jacob, JT., Han, MC., Chung, BM., Batazzi, AS., Poll, BG., Guo, Y., Han, J., Ong, S., Zheng, W., Taube, JM., Čiháková, D., Wan, F. and Coulombe, PA. 2015, "Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes," Nat Genet. 47(8):933-8. PMCID: PMC4520766 ​PubMed​
Moore,CD.*, Ajala, OZ.* and Zhu, H., 2015, "Applications in high-content functional protein microarrays," Curr Opin Chem Biol. 30:21-27.  Review. *equal contribution PubMed
Echeverria, I., Liu, Y., Gabelli, SB., and Amzel, LM., 2015, "Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α," FEBS J. 282(18):3528-42.​ PMCID: PMC4573839 PubMed
Margolis, SS., Sell, GL., Zbinden, MA., and Bird, LM., 2015, "Angelman Syndrome," Neurotherapeutics. 12(3):641-50.​ ​ PubMed
Ellis, JM., Bowman, CE. and Wolfgang, MJ., 2015, "Metabolic and tissue-specific regulation of acyl-CoA metabolism," PLoS One. 10(3):e0116587.​ ​ PubMed
Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, "Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina," PLoS One. 10(12):e0143650.​ ​ PubMed
Yuan, G.*, Vasavda, C.*, Peng, YJ.*, Makarenko, VV.*, Raghuraman, G., Nanduri, J., Gadalla, MM., Semenza, GL., Kumar, GK., Snyder, SH. and Prabhakar, NR., 2015, "Protein kinase G-regulated production of H2S governs oxygen sensing," Sci Signal. 8(373):ra37. *equal contribution  PubMed​
Mohammad, F., Woolstenhulme, CJ., Green, R., and Buskirk, AR., 2015, "Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling," Cell Rep. pii: S2211-1247(15)01529-6.​  PubMed
Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL., and Blankson, JN., 2015, "A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads," J Infect Dis. 212(9):1387-96. PubMed
de la Peña, AH., Suarez, A., Duong-Ly, KC., Schoeffield, AJ., Pizarro-Dupuy, MA., Zarr, M., Pineiro, SA., Amzel, LM. and Gabelli, SB., 2015, "Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus," PLoS One, PMID: 26524597 PubMed
Baras, AS., Mitchell, CJ., Myers, JR., Gupta, S., Weng, LC., Ashton, JM., Cornish, TC., Pandey, A. and  Halushka, MK., 2015, "miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy," PLoS One. PMID: 26571139  PubMed
Phua, SC., Lin, YC. and Inoue, T., 2015, "An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli," Cell Calcium. 58(4):415-22. Review. PMID: 25828566 PubMed​
Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., Chen, X., 2015, An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation. Cell Rep. 13(2):315-25. PMID: 26440886  PubMed
Sundararajan, K.*, Miguel, A., Desmarais, SM., Meier, EL*., Casey, Huang, K. and Goley, ED.*, 2015, "The bacterial tubulin FtsZ requires its intrinsically disordered linker to direct robust cell wall construction," Nat Commun. 6:7281. PMCID: PMC4532373 *equal contribution​ PubMed
Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, "IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes," Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknown PubMed
Greenspan, LJ., de Cuevas, M. and Matunis, E., 2015, "Genetics of gonadal stem cell renewal," Annu Rev Cell Dev Biol. 31:291-315. PMID: 26355592 PubMed​
Lee, CF., Lo, YC., Cheng, CH., Furtmüller, GJ., Oh, B., Andrade-Oliveira, V., Thomas, AG., Bowman, CE., Slusher, BS., Wolfgang, MJ., Brandacher, G., Powell, JD., 2015, "Preventing Allograft Rejection by Targeting Immune Metabolism," Cell Rep. 13(4):760-70. PMID: 26489460 PubMed

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