Recent Publications

2012

Mularoni, L., Zhou, Y., Bowen, T., Gangadharan, S., Wheelan, SJ. and Boeke, JD., 2012, "Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots," Genome Res. 22(4):693-703. doi: 10.1101/gr.129460.111. Epub 2012 Jan 4, PMCID: PMC3317151Pubmed 
Lessard, JC. and Coulombe, PA., 2012, "Keratin 16-null mice develop palmoplantar keratoderma, a hallmark feature of pachyonychia congenita and related disorders," J Invest Dermatol,132(5):1384-91. PMCID: PMC3326191 Pubmed 
Tamura, Y., Onguka, O., Itoh, K., Endo, T., Iijima, M., Claypool, SM. and Sesaki, H., 2012, "Phosphatidylethanolamine biosynthesis in mitochondria: phosphatidylserine (PS) trafficking is independent of a PS decarboxylase and intermembrane space proteins UPS1P and UPS2P," J Biol Chem. 287(52):43961-71. PMCID: PMC3527979 Pubmed 
Ewald, AJ., Huebner, RJ., Palsdottir, H., Lee, JK., Perez, MJ., Jorgens, DM., Tauscher, AN., Cheung, KJ., Werb, Z. and Auer, M., 2012, "Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium," J Cell Sci. 125(Pt 11):2638-54. PMCID: PMC3403234  Pubmed 
Zhong, J., Kim, MS., Chaerkady, R., Wu, X., Huang, TC., Getnet, D., Mitchell, CJ., Palapetta, SM., Sharma, J., O’Meally, RN., Cole, RN., Yoda, A., Moritz, A., Loriaux, MM., Rush, J., Weinstock, DM., Tyner, JW. and Pandey, A., 2012, "TSLP signaling network revealed by SILAC-based phosphoproteomics," Mol Cell Proteomics. 11(6):M112.017764.PMCID: PMC3433886 Pubmed 
Shirley, MD., Baugher, JD., Stevens, EL., Tang, Z., Gerry, N., Beiswanger, CM., Berlin., DS and Pevsner, J., 2012, "Chromosomal variation in lymphoblastoid cell lines," Hum Mutat. 33(7):1075-86. PMCID: PMC3370055 Pubmed 
West-Foyle, H. and Robinson, DN., 2012, "Cytokinesis mechanics and mechanosensing," Cytoskeleton, 69(10):700-709. PMCID: PMC3477504 Pubmed 
Herb, BR., Wolschin, F., Hansen, KD., Aryee, MJ., Langmead, B., Irizarry, R., Amdam, GV., and Feinberg, AP., 2012, "Reversible switching between epigenetic states in honeybee behavioral subcastes," Nat Neurosci. 15(10):1371-3. PMCID: PMC3518384Pubmed 
Hatori, Y., Clasen, S., Hasan, NM., Barry, AN. and Lutsenko, S., 2012, "Functional partnership of the copper export machinery and glutathione balance in human cells," J Biol Chem. 2287(32):26678-87. PMCID: PMC3411007 Pubmed 
Zhu, H., Cox, E. and Qian, J.,2012, "Functional protein microarray as molecular decathlete: A versatile player in clinical proteomics," Proteomics Clin Appl. 6(11-12):548-62.  PMCID: PMC3600421 Pubmed
Jilek, BL., Zarr, M., Sampah, ME., Rabi, SA., Bullen, CK., Lai, J., Shen, L. and Siliciano, RF., 2012, "A quantitative basis for antiretroviral therapy for HIV-1 infection," Nat Med. 18(3):446-51. PMCID: PMC3296892 Pubmed
Carracedo, A., Weiss, D., Leliaert, AK., Bhasin, M., de Boer, VC., Laurent, G., Adams, AC., Sundvall, M., Song, SJ., Ito, K., Finley, LS., Egia, A., Libermann, T., Gerhart-Hines, Z., Puigserver, P., Haigis, MC., Maratos-Flier, E., Richardson, AL., Schafer, ZT. and Pandolfi, PP., 2012, "A metabolic prosurvival role for PML in breast cancer," J Clin Invest. 122(9):3088-100. PMCID: PMC3433768  Pubmed
Rotty, JD. and Coulombe PA., 2012, "A wound-induced keratin inhibits Src activity during keratinocyte migration and tissue repair," J Cell Biol,197(3):381-9. PMCID: PMC3341159  Pubmed
Darby, MM., Serebreni, L., Pan, X., Boeke, JD. and Corden, JL., 2011, "The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion," Mol Cell Biol., 32(10):1762-75. PMCID: PMC3347421Pubmed​ 
Ruch, TR. and Machamer, CE., 2012, "A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein," PLoS Pathog., 2012;8(5):e1002674. PMCID: PMC3343006  Pubmed 
Stevens, EL., Heckenberg, G., Baugher, JD., Roberson, ED., Downey, TJ. and Pevsner, J., 2012, "Consanguinity in Centre d'Étude du Polymorphisme Humain (CEPH) pedigrees," Eur J Hum Genet. 20(6):657-67. PMCID: PMC3355261 Pubmed  
Alammar Zaritsky, L., Gama, L. and Clements, JE., 2012, "Canonical type I IFN signaling in simian immunodeficiency virus-infected macrophages is disrupted by astrocyte-secreted CCL2," J Immunol. 188(8):3876-85. PMCID: PMC3343693 Pubmed 
Shoemaker, CJ. and Green, R., 2012, "Translation drives mRNA quality control," Nat Struct Mol Biol. 19(6):594-601. PMCID: PMC4299859 Pubmed 
Becker, T., Franckenberg, S., Wickles, S., Shoemaker, CJ., Anger, A.,  Armache, JP., Sieber, H., Ungewickell, C., Berninghausen, O., Dabarkov, I., Karcher, A., Thomm, M., Hopfner, KP., Green, R. and Beckmann, R., 2012, "Structural basis of highly conserved ribosome recycling in eukaryotes  and archaea," Nature. 482(7386):501-6. PMID: 22358840 Pubmed 
Simon, DN., Domaradzki, T., Hofmann, WA. and Wilson, KL., 2013, "Lamin A tail modification by SUMO1 is disrupted by familial partial lipodystrophy-causing mutations," Mol Biol Cell., 24(3):342-50. PMCID: PMC3564541  Pubmed 
Huster, D., Kühne, A., Bhattacharjee, A., Raines, L., Jantsch, V., Noe, J., Schirrmeister, W., Sommerer, I., Sabri, O., Berr, F., Mössner, J., Stieger, B., Caca, K. and Lutsenko, S., 2012, "Diverse functional properties of Wilson disease ATP7B variants," Gastroenterology. 142(4), 947-956. PMCID: PMC3461965 Pubmed 
Currier, DG., Polk, RC. and Reeves, RH., 2012, "A Sonic hedgehog (Shh) response deficit in trisomic cells may be a common denominator for multiple features of Down syndrome," Prog Brain Res. 197:223-36. PMCID: PMC4405118 Pubmed 
Rodriguez, S. and Wolfgang, MJ., 2012, "Targeted chemical-genetic regulation of protein stability in vivo," Chem Biol. 19(3):391-8. PMCID: PMC3314227 Pubmed 
DeRose, R., Pohlmeyer, C., Umeda, N., Ueno, T., Nagano, T., Kuo, S. and Inoue, T., 2012, "Spatio-temporal manipulation of small GTPase activity at subcellular level and on timescale of seconds in living cells," J Vis Exp. (61). pii: 3794. PMCID: PMC3460574 Pubmed 
Dancy, BC., Ming, SA., Papazyan, R., Jelinek, CA., Majumdar, A., Sun, Y., Dancy, BM., Drury, WJ 3rd., Cotter, RJ., Taverna ,SD. and Cole, PA., 2012, "Azalysine analogues as probes for protein lysine deacetylation and demethylation," J Am Chem Soc. 134(11):5138-48. PMCID: PMC3313494 Pubmed
Miyamoto, T., DeRose, R., Suarez, A., Ueno, T., Chen, M., Sun, TP., Wolfgang, MJ., Mukherjee, C., Meyers, DJ. and Inoue, T., 2012, "Rapid and orthogonal logic gating with a gibberellin-induced dimerization system," Nat Chem Biol. 8(5):465-70. PMCID: PMC3368803 Pubmed 
Kouser, M., Speed, HE., Dewey, CM., Reimers, JM., Widman, AJ., Gupta, N., Liu, S., Jaramillo, TC., Bangash, M., Xiao, B., Worley, PF. and Powell, CM., 2011, "Loss of predominant Shank3 isoforms results in hippocampus-dependent impairments in behavior and synaptic transmission," Cell, 145(5):758-72 PMCID: PMC3834052  PubMed
Schaughency, P., Merran, J. and Corden, JL., 2010, "Genome-Wide Mapping of Yeast RNA Polymerase II Termination," PLoS Genet. 10(10):e1004632.  PMCID: PMC4191890  PubMed
Nguyen-Ngoc, KV., Cheung, KJ., Brenot, A., Shamir, ER., Gray, RS., Hines, WC., Yaswen, P., Werb, Z. and Ewald, AJ., 2012, "ECM microenvironment regulates collective migration and local dissemination in normal and malignant mammary epithelium," Proc Natl Acad Sci U S A. 109(39):E2595-604. Epub 2012 Aug 23, PMCID: PMC3465416 PubMed
Wang, JT. and Seydoux, G., 2013, "Germ cell specification," Adv Exp Med Biol. 757:17-39. Review, PMCID: unknown  Pubmed​
Chan, W., Schaffer, TB. and Pomerantz, JL., 2013, "A quantitative signaling screen identifies CARD11 mutations in the CARD and LATCH domains that induce Bcl10 ubiquitination and human lymphoma cell survival," Mol Cell Biol. 33(2):429-43. PMCID: PMC3554118 Pubmed
Shilagardi, K., Li, S., Luo, F., Marikar, F., Duan, R., Jin, P., Kim, JH., Murnen, K. and Chen, EH., 2013, "Actin-propelled invasive membrane protrusions promote fusogenic protein engagement during cell-cell fusion," Science. PMCID: PMC3631436 PubMed
Huang, Q., Purzycka, KJ., Lusvarghi, S., Li, D., Legrice, SF. and Boeke, JD., 2013,  "Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription," RNA. 19(3):320-32. PMCID: PMC3677243 PubMed
Newman, RH., Hu, J., Rho, HS., Xie, Z., Woodard, C., Neiswinger, J., Cooper, C., Shirley, M., Clark, HM., Hu, S., Hwang, W., Jeong, JS., Wu, G., Lin, J., Gao, X., Ni, Q., Goel, R., Xia, S., Ji, H., Dalby, KN., Birnbaum, MJ., Cole, PA., Knapp, S., Ryazanov, AG., Zack, DJ., Blackshaw, S., Pawson, T., Gingras, AC., Desiderio, S., Pandey, A., Turk, BE., Zhang, J., Zhu, H. and Qian, J., 2013, "Construction of human activity-based phosphorylation networks," Mol Syst Biol. 9:655. PMCID: PMC3658267  PubMed
Stine, RR. and Matunis, EL., 2013, "Stem cell competition: finding balance in the niche," Trends Cell Biol. 23(8):357-64.  PMCID:  PMC3729747 PubMed
Baile, MG., Whited, K. and Claypool, SM., 2013, "Deacylation on the matrix side of the mitochondrial inner membrane regulates cardiolipin remodeling," Mol Biol Cell. ;24(12):2008-20. PMCID: PMC3681703  PubMed
Shirley, MD., Tang, H., Gallione., CJ, Baugher, JD., Frelin, LP., Cohen, B., North, PE., Marchuk, DA., Comi, AM. and Pevsner, J., 2013, "Sturge-Weber syndrome and port-wine stains caused by somatic mutation in GNAQ," N Engl J Med., 368(21):1971-9.  PMCID: PMC3749068 PubMed
Stine, RR. and Matunis, EL., 2013,  'JAK-STAT signaling in stem cells, ' Adv Exp Med Biol. 786:247-67. PMID: 23696361 PubMed
Zhao, X., Tang, Z., Zhang, H., Atianjoh, FE., Zhao, JY., Liang, L., Wang, W., Guan, X., Kao, SC., Tiwari, V., Gao, YJ., Hoffman, PN., Cui, H., Li, M., Dong, X. and Tao, YX., 2013, "A long noncoding RNA contributes to neuropathic pain by silencing Kcna2 in primary afferent neurons," Nat Neurosci. 16(8):1024-31 PMCID:  PMC3742386 PubMed
Baugher, JD., Baugher, BD., Shirley, MD and Pevsner, J., 2013, "Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method," BMC Genomics. 14:367. PMCID: PMC3680018 PubMed

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