Recent Publications

2019

Zieman AG, Poll BG, Ma J, Coulombe PA. 2019 Jul 1. “Altered keratinocyte differentiation is an early driver of keratin mutation-based palmoplantar keratoderma.” Hum Mol Genet. 28(13):2255-2270. doi: 10.1093/hmg/ddz050. PMCID: PMC6602407. PubMed  
Dresselhaus EC, Meffert MK., 2019 May 9. "Cellular Specificity of NF-κB Function in the Nervous System." Front Immunol, 10:1043. doi: 10.3389/fimmu.2019.01043. eCollection 2019. Review. PMCID: PMC6520659. PubMed.
Weaver J, Mohammad F, Buskirk AR, Storz G, 2019 Mar 5. "Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes." MBio, 10(2). pii: e02819-18. doi: 10.1128/mBio.02819-18. PMCID: PMC6401488. PubMed.
Meixiong J, Vasavda C, Snyder SH, Dong X., 2019 May 21. "MRGPRX4 is a G protein-coupled receptor activated by bile acids that may contribute to cholestatic pruritus." Proc Natl Acad Sci USA, 116(21):10525-10530. doi: 10.1073/pnas.1903316116. PMCID: PMC6535009 PubMed.
DeFelice MM*, Clark HR*, Hughey JJ*, Maayan I, Kudo T, Gutschow MV, Covert MW, Regot S., 2019 Apr 30. "NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop." Sci Signal. 12(579). pii: eaau3568. doi: 10.1126/scisignal.aau3568. *equal contribution. PubMed.
Moyer TC, Holland AJ., 2019 May 22. "PLK4 promotes centriole duplication by phosphorylating STIL to link the procentriole cartwheel to the microtubule wall." Elife, 8. pii: e46054. doi: 10.7554/eLife.46054. [Epub ahead of print]. PMCID: PMC6570480  PubMed.
Zhu L, Liao SE, Ai Y, Fukunaga R, 2019 May 30. "RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries.", PLoS One.14(5):e0217603. doi: 10.1371/journal.pone.0217603. eCollection 2019. PMCID: PMC6542536 PubMed.
Syu GD, Wang SC, Ma G, Liu S, Pearce D, Prakash A, Henson B, Weng LC, Ghosh D, Ramos P, Eichinger D, Pino I, Dong X, Xiao J, Wang S, Tao N, Kim KS, Desai PJ, Zhu H., 2019 Apr 30, "Development and application of a high-content virion display human GPCR array." Nat Commun.;10(1):1997. doi: 10.1038/s41467-019-09938-9. PMCID: PMC6491619  PubMed.
 
Bowman CE, Scafidi J, Scafidi S., 2019, ”Metabolic perturbations after pediatric TBI: It's not just about glucose”, Exp Neurol. Review. 316:74-84. PubMed  
Clister T, Greenwald EC, Baillie GS, Zhang J., 2019 Jun 20, “AKAP95 Organizes a Nuclear Microdomain to Control Local cAMP for Regulating Nuclear PKA”, Cell Chem Biol. 26(6):885-891.e4. doi: 10.1016/j.chembiol.2019.03.003. PMCID: PMC6588460. PubMed  
Bowman CE, Selen Alpergin ES, Ellis JM, Wolfgang MJ., 2019 Nov 1, “Loss of ACOT7 potentiates seizures and metabolic dysfunction”, Am J Physiol Endocrinol Metab. 317(5):E941-E951. doi: 10.1152/ajpendo.00537.2018. PMCID: PMC6879868. PubMed  
Liao SE, Kandasamy SK, Zhu L, Fukunaga R. 2019 Jul.”DEAD-box RNA helicase Belle posttranscriptionally promotes gene expression in an ATPase activity-dependent manner.” RNA.;25(7):825-839. doi: 10.1261/rna.070268.118. Epub 2019 Apr 12. PMID: 30979781. PMCID: PMC6573787. PubMed.  
Little HC, Rodriguez S, Lei X, Tan SY, Stewart AN, Sahagun A, Sarver DC, Wong GW., 2019, “Myonectin deletion promotes adipose fat storage and reduces liver steatosis” FASEB J. fj201900520R. PubMed  
Lariviere PJ, Mahone CR, Santiago-Collazo G, Howell M, Daitch AK, Zeinert R, Chien P, Brown PJB, Goley ED., 2019, “An Essential Regulator of Bacterial Division Links FtsZ to Cell Wall Synthase Activation”, Curr Biol. pii: S0960-9822(19)30394-X. PubMed  
Patel SP, Vasavda C, Ho B, Meixiong J, Dong X, Kwatra SG., 2019, “Cholestatic pruritus: Emerging mechanisms and therapeutics”, J Am Acad Dermatol. pii: S0190-9622(19)30627-9. Review. PubMed  
Cook EK, Sell GL, Schaffer TB, Margolis SS., 2019 Apr, "The emergence of Ephexin5 as a therapeutic target in Alzheimer's disease." Expert Opin Ther Targets. 23(4):263-265. PMCID: PMC6715421 PubMed
Calzada, E.,Avery E, Sam PN, Modak A, Wang C, McCaffery JM, Han X, Alder NN, Claypool SM., 2019, "Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function." Nat Commun. 10(1):1432 PMCID: PMC6441012 PubMed
Putnam A, Cassani M, Smith J, Seydoux G. 2019, "A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos," Nat Struct Mol Biol. (3):220-226. doi: 10.1038/s41594-019-0193-2. Epub 2019 Mar 4. PMID: 30833787. PMCID: PMC6668929  PubMed  
Latallo MJ, Livingston NM, Wu B., 2019, "Translation imaging of single mRNAs in Established Cell Lines and Primary Cultured Neurons." Methods. pii: S1046-2023(18)30341-4. Review. PubMed  
Allen J, Hao S, Sears CL, Timp W., 2019, "Epigenetic changes induced by Bacteroides fragilis toxin (BFT)." Infect Immun. pii: IAI.00447-18. PubMed
Westerbeck JW, Machamer CE., 2019, "The Infectious Bronchitis Coronavirus Envelope Protein Alters Golgi pH to Protect Spike Protein and Promote Release of Infectious Virus." J Virol.  pii: JVI.00015-19. PubMed
Yue WWS*, Silverman D*, Ren X, Frederiksen R, Sakai K, Yamashita T, Shichida Y, Cornwall MC4, Chen J, Yau KW., 2019 "Elementary response triggered by transducin in retinal rods." Proc Natl Acad Sci U S A. 116(11):5144-5153 PMCID: PMC6421417 *equal contribution PubMed
Bartee D, Sanders S, Phillips PD, Harrison MJ, Koppisch AT, Freel Meyers CL., 2019, "Enamide Prodrugs of Acetyl Phosphonate Deoxy-d-xylulose-5-phosphate Synthase Inhibitors as Potent Antibacterial Agents." ACS Infect Dis. 5(3):406-417, PMCID: PMC6592275.  PubMed  
Worden EJ, Hoffmann NA, Hicks CW, Wolberger C. 2019 Mar 7. “Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L.” Cell.;176(6):1490-1501.e12. doi: 10.1016/j.cell.2019.02.002. Epub 2019 Feb 11. PMID: 30765112. PMCID: PMC6498860. PubMed.  
Schiffhauer, ES., Ren, Y., Iglesias, V., Kothari, P., Iglesias, PA. and Robinson, DN., 2019, "Myosin IIB assembly-state determines myosin IIB mechanosensitive dynamics," J. Cell Biol.218(3):895-908, PMCID: PMC6400566. PubMed  
Vissers C, Ming GL, Song H., 2019, "Nanoparticle technology and stem cell therapy team up against neurodegenerative disorders." Adv Drug Deliv Rev. pii: S0169-409X(19)30023-7. PubMed
Zhang W, Zhang X, Xue Z, Li Y, Ma Q, Ren X, Zhang J, Yang S, Yang L, Wu M, Ren M, Xi R, Wu Z, Liu JL, Matunis E, Dai J, Gao G., 2019, "Probing the Function of Metazoan Histones with a Systematic Library of H3 and H4 Mutants." Dev Cell. 48(3):406-419.e5. PubMed  
Tao Y, Kang B, Petkovich DA, Bhandari YR, In J, Stein-O'Brien G, Kong X, Xie W, Zachos N, Maegawa S, Vaidya H, Brown S, Chiu Yen RW, Shao X, Thakor J, Lu Z, Cai Y, Zhang Y, Mallona I, Peinado MA, Zahnow CA, Ahuja N, Fertig E, Issa JP, Baylin SB, Easwaran H., 2019, "Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and BrafV600E-Induced Tumorigenesis." Cancer Cell. 35(2):315-328.e6. PMID: 30753828. PMCID: PMC6636642. PubMed   
Mohammad F, Green R, Buskirk AR., 2019 Feb 6, "A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution." Elife. 8. pii: e42591. PMCID: PMC6377232  PubMed
Kreutzberger AJB, Ji M, Aaron J, Mihaljević L, Urban S., 2019 Feb 1, "Rhomboid distorts lipids to break the viscosity-imposed speed limit of membrane diffusion. Science. 363(6426). pii: eaao0076. doi: 10.1126/science.aao0076. PMCID: PMC6368390  PubMed
Shubitowski TB, Poll BG, Natarajan N, Pluznick JL., 2019 Feb, “Short-chain fatty acid delivery: assessing exogenous administration of the microbiome metabolite acetate in mice,” Physiol Rep.7(4):e14005. doi: 10.14814/phy2.14005. PMCID: PMC6391713 PubMed
Bruner KM, Wang Z, Simonetti FR, Bender AM, Kwon KJ, Sengupta S, Fray EJ, Beg SA, Antar AAR, Jenike KM, Bertagnolli LN, Capoferri AA, Kufera JT, Timmons A, Nobles C, Gregg J, Wada N, Ho YC, Zhang H, Margolick JB, Blankson JN, Deeks SG, Bushman FD, Siliciano JD, Laird GM, Siliciano RF., 2019, "A quantitative approach for measuring the reservoir of latent HIV-1 proviruses." Nature. 566(7742):120-125. PMID: 30700913. PMCID: PMC6447073. PubMed
Howell M, Aliashkevich A, Sundararajan K, Daniel JJ, Lariviere PJ, Goley ED, Cava F, Brown PJB., 2019, "Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division. Mol Microbiol doi: 10.1111/mmi.14212. PubMed
Kothari, P., Srivastava, V., Aggarwal, V., Tchernyshyov, I., Van Eyk, J., Ha, T., and Robinson, DN., 2019, "Contractility kits promote assembly of the mechanoresponsive cytoskeletal network," J. Cell Sci.  132(2): 1-12, PMCID: PMC6362397. PubMed
Meixiong J, Vasavda C, Green D, Zheng Q, Qi L, Kwatra SG, Hamilton JP, Snyder SH, Dong X., 2019, "Identification of a bilirubin receptor that may mediate a component of cholestatic itch." Elife. 8. pii: e44116. PubMed  
Avin BA, Wang Y, Gilpatrick T, Workman RE, Lee I, Timp W, Umbricht CB, Zeiger MA. 2019 Aug. “Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines.” Genes Chromosomes Cancer.;58(8):530-540. doi: 10.1002/gcc.22735. PMID: 30664813. PMCID: PMC6621557. PubMed.  
Capowski EE, Samimi K, Mayerl SJ, Phillips MJ, Pinilla I, Howden SE, Saha J, Jansen AD, Edwards KL, Jager LD, Barlow K, Valiauga R, Erlichman Z, Hagstrom A, Sinha D, Sluch VM, Chamling X, Zack DJ, Skala MC, Gamm DM. 2019 Jan 9. “Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.” Development. 146(1). pii: dev171686. doi: 10.1242/dev.171686. PMID: 3056793. PMCID: PMC6340149. PubMed.  
Wied, TJ., Chin, AC. and Lau, AY., 2019, “High Conformational Variability in the GluK2 Kainate Receptor Ligand-Binding Domain,” Structure, 27(1):189-195.e2. doi: 10.1016/j.str.2018.09.008. PMCID: PMC6363114, PubMed
Lilley, BN., Sabbah, S., Hunyara, JL., Gribble, KD., Al-Khindi, T., Xiong, J., Wu, Z., Berson, DM., Kolodkin, AL., 2019 Jan 1, “Genetic access to neurons in the accessory optic system reveals a role for Sema6A in midbrain circuitry mediating motion perception,” J Comp Neurol. 527(1):282-296. doi: 10.1002/cne.24507. PMCID: PMC6312510 PubMed
Bowman CE, Wolfgang MJ., 2019 Jan, "Role of the malonyl-CoA synthetase ACSF3 in mitochondrial metabolism." Adv Biol Regul. 71:34-40. Review. PMCID: PMC6347522 PubMed

2018

Calzada, E., McCaffery, J.M. and Claypool, S. (2018). Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function. bioRxiv (Pre-print), 269233; doi: Link  
Ogunbona, O. B., Baile, M. G., & Claypool, S. M. (2018). Cardiomyopathy-associated mutation in the ADP/ATP carrier reveals translation-dependent regulation of cytochrome c oxidase activity. Molecular biology of the cell, 29(12), 1449-1464. PMCID: PMC6014099 PubMed  
Ward, A., Kumari, G., Sen, R., Desiderio, S., 2018, "The RAG-2 Inhibitory Domain Gates Accessibility of the V(D)J Recombinase to Chromatin," Mol Cell Biol. 38 (15) e00159-18; PMCID: PMC6048317 PubMed  
Weng YL, Wang X, An R, Cassin J, Vissers C, Liu Y, Liu Y, Xu T, Wang X, Wong SZH, Joseph J, Dore LC, Dong Q, Zheng W, Jin P, Wu H, Shen B, Zhuang X, He C, Liu K, Song H, Ming GL., 2018, "Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System," Neuron, 97(2):313-325 PMCID: PMC5777326 PubMed  
Tutucci E, Livingston NM, Singer RH, Wu B., 2018, "Imaging mRNA In Vivo, from Birth to Death," Annu Rev Biophys. 47:85-106 PubMed  
Minamisawa G, Kwon SE, Chevée M, Brown SP, O'Connor DH. 2018 May 29. “A Non-canonical Feedback Circuit for Rapid Interactions between Somatosensory Cortices.” Cell Rep.;23(9):2718-2731.e6. doi: 10.1016/j.celrep.2018.04.115. PMID: 29847801. PubMed.  
Chevée, M., Robertson, J. J., Cannon, G. H., Brown, S. P., & Goff, L. A. (2018). Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons. Cell reports, 22(2), 441-455. PMCID: PMC5863578 PubMed
Buss, J., Coltharp, C., Huang, T., Pohlmeyer, C., Wang, SC., Hatem, C. and Xiao, J., 2013, "In vivo organization of the FtsZ-ring by ZapA and ZapB revealed by quantitative super-resolution microscopy," Mol Microbiol. 89(6):1099-120. PMCID: PMC3894617  PubMed
Moyer, T., Kandels-Lewis, S., Ohta, M., Kitagawa, D., Holland, AJ., Karsenti, E., Lorca, T., Lince-Faria, M. and Bettencourt-Dias, M., 2016, “CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis,”  Curr Biol. 26(9):1127-37. PMCID: PMC4867225 PubMed
Adivarahan, S., Livingston, N., Nicholson, B., Rahman, S., Wu, B., Rissland, OS. and Zenklusen, D., 2018, “Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway,”Mol Cell. 72(4):727-738.e5. PMID: 30415950 PubMed

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