Guo B, Ling W, Kwon SH, Panwar P, Ghazanfar S, Martinowich K, Hicks SC., 2025, Integrating Spatially-Resolved Transcriptomics Data Across Tissues and Individuals: Challenges and Opportunities, Small Methods, 9(5):e2401194. doi: 10.1002/smtd.202401194. PMCID: PMC12103234 PubMed
Huuki-Myers LA, Montgomery KD, Kwon SH, Cinquemani S, Eagles NJ, Gonzalez-Padilla D, Maden SK, Kleinman JE, Hyde TM, Hicks SC, Maynard KR, Collado-Torres L., 2025, Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex, Genome Biol., 26(1):88. doi: 10.1186/s13059-025-03552-3. PMCID: PMC11978107 PubMed
Huuki-Myers LA, Spangler A, Eagles NJ, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A; PsychENCODE Consortium†; Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR; PsychENCODE Consortium, 2024, A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science, 384(6698):eadh1938. doi: 10.1126/science.adh1938. PMID: 38781370 PubMed
Maden SK, Huuki-Myers LA, Kwon SH, Collado-Torres L, Maynard KR, Hicks SC., 2025, lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression, BMC Genomics, 26(1):433. doi: 10.1186/s12864-025-11508-x. PMCID: PMC12045009 PubMed
Nelson ED, Tippani M, Ramnauth AD, Divecha HR, Miller RA, Eagles NJ, Pattie EA, Kwon SH, Bach SV, Kaipa UM, Yao J, Kleinman JE, Collado-Torres L, Han S, Maynard KR, Hyde TM, Martinowich K, Page SC, Hicks SC., 2024, An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus, bioRxiv [Preprint], 2024.04.26.590643. doi: 10.1101/2024.04.26.590643. PMCID: PMC11071618 PubMed
Huuki-Myers LA, Montgomery KD, Kwon SH, Cinquemani S, Maden SK, Eagles NJ, Kleinman JE, Hyde TM, Hicks SC, Maynard KR, Collado-Torres L., 2024, Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex, bioRxiv [Preprint], 2024.02.09.579665. doi: 10.1101/2024.02.09.579665. PMCID: PMC10888823 PubMed
Weber LM, Divecha HR, Tran MN, Kwon SH, Spangler A, Montgomery KD, Tippani M, Bharadwaj R, Kleinman JE, Page SC, Hyde TM, Collado-Torres L, Maynard KR, Martinowich K, Hicks SC., 2024, The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics, Elife, 12:RP84628. doi: 10.7554/eLife.84628. PMID: 38266073 PubMed
Maden SK, Kwon SH, Huuki-Myers LA, Collado-Torres L, Hicks SC, Maynard KR., 2023, Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets, Genome Biol., 24(1):288. doi: 10.1186/s13059-023-03123-4. PMCID: PMC10722720 PubMed
Huuki-Myers LA, Montgomery KD, Kwon SH, Page SC, Hicks SC, Maynard KR, Collado-Torres L., 2023, Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue, Genome Biol., 24(1):233. doi: 10.1186/s13059-023-03066-w. PMCID: PMC10578035 PubMed
Kwon SH, Parthiban S, Tippani M, Divecha HR, Eagles NJ, Lobana JS, Williams SR, Mak M, Bharadwaj RA, Kleinman JE, Hyde TM, Page SC, Hicks SC, Martinowich K, Maynard KR, Collado-Torres L., 2023, Influence of Alzheimer's disease related neuropathology on local microenvironment gene expression in the human inferior temporal cortex, GEN Biotechnol., 2(5):399-417. doi: 10.1089/genbio.2023.0019. PMCID: PMC11426291 PubMed
Sadashivaiah V, Tippani M, Page SC, Kwon SH, Bach SV, Bharadwaj RA, Hyde TM, Kleinman JE, Jaffe AE, Maynard KR., 2023, SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues, BMC Neurosci., 24(1):6. doi: 10.1186/s12868-022-00765-1. PMCID: PMC9878864 PubMed
