Recent Publications

Shu DH, Ho WJ, Kagohara LT, Girgis A, Shin SM, Danilova L, Lee JW, Sidiropoulos DN, Mitchell S, Munjal K, Howe K, Bendinelli KJ, Kartalia E, Qi H, Mo G, Montagne J, Leatherman JM, Lopez-Vidal TY, Zhu Q, Huff AL, Yuan X, Hernandez A, Coyne EM, Zaidi N, Zabransky DJ, Engle LL, Ogurtsova A, Baretti M, Laheru D, Durham JN, Wang H, Sunshine JC, Johnston RJ, Deutsch JS, Taube JM, Anders RA, Jaffee EM, Fertig EJ, Yarchoan M., 2024, Immunotherapy response induces divergent tertiary lymphoid structure morphologies in hepatocellular carcinoma, Nat Immunol., 25(11):2110-2123. doi: 10.1038/s41590-024-01992-w. PMID: 39455893  PubMed

Beaver AK, Keneskhanova Z, Cosentino RO, Weiss BL, Awuoche EO, Smallenberger GM, Buenconsejo GY, Crilly NP, Smith JE, Hakim JMC, Zhang B, Bobb B, Rijo-Ferreira F, Figueiredo LM, Aksoy S, Siegel TN, Mugnier MR., 2024, Tissue spaces are reservoirs of antigenic diversity for Trypanosoma brucei, Nature, doi: 10.1038/s41586-024-08151-z. PMID: 39478231  PubMed

Palmer T, Kessler MD, Shao XM, Balan A, Yarchoan M, Zaidi N, Lopez-Vidal TY, Saeed AM, Gore J, Azad NS, Jaffee EM, Favorov AV, Anagnostou V, Karchin R, Gaykalova DA, Fertig EJ, Danilova L., 2024, SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors, Cancer Res Commun., doi: 10.1158/2767-9764.CRC-23-0309. PMID: 39470352  PubMed

Payne IP, Aubry B, Barrows JM, Brown PJB, Goley ED., 2024, The cell division protein FzlA performs a conserved function in diverse alphaproteobacterial, J Bacteriol, 206(10):e0022524. doi: 10.1128/jb.00225-24. PMCID: PMC11500498  PubMed

Chang D, Caterina MJ., 2024, Pinning down a perpetrator in postsurgical eye pain, Proc Natl Acad Sci U S A, 121(43):e2417221121. doi: 10.1073/pnas.2417221121. PMCID: PMC11513913  PubMed

Wu M, Beck C, Lee JH, Fulbright RM Jr, Jeong J, Inman JT, Woodhouse MV, Berger JM, Wang MD., 2024, Human Topoisomerase IIα Promotes Chromatin Condensation Via a Phase Transition, bioRxiv [Preprint], 2024.10.15.618281. doi: 10.1101/2024.10.15.618281. PMCID: PMC11507700  PubMed

Qian J, Lubkowska L, Zhang S, Tan C, Hong Y, Fulbright RM, Inman JT, Kay TM, Jeong J, Gotte D, Berger JM, Kashlev M, Wang MD., 2024, Chromatin Buffers Torsional Stress During Transcription, bioRxiv [Preprint]., 2024.10.15.618270. doi: 10.1101/2024.10.15.618270. PMCID: PMC11507789  PubMed

Schapfl MA, LoMastro GM, Braun VZ, Hirai M, Levine MS, Kiermaier E, Labi V, Holland AJ, Villunger A., 2024, Centrioles are frequently amplified in early B cell development but dispensable for humoral immunity, Nat Commun., 15(1):8890. doi: 10.1038/s41467-024-53222-4. PMCID: PMC11480410  PubMed

Tang F, Dong T, Zhou C, Deng L, Liu HB, Wang W, Liu G, Ying M, Li PP., 2024, Genetically engineered human induced pluripotent stem cells for the production of brain-targeting extracellular vesicles, Stem Cell Res Ther., 15(1):345. doi: 10.1186/s13287-024-03955-2. PMCID: PMC11462716  PubMed

Stoltzfus MJ, Workman RE, Keith NC, Modell JW., 2024, A dynamic subpopulation of CRISPR-Cas overexpressers allows Streptococcus pyogenes to rapidly respond to phage, Nat Microbiol., 9(9):2410-2421. doi: 10.1038/s41564-024-01748-0. PMID: 38997519  PubMed

Chen J, Yang J, Chu J, Chen KH, Alt J, Rais R, Qiu Z., 2024, The SWELL1 Channel Promotes Ischemic Brain Damage by Mediating Neuronal Swelling and Glutamate Toxicity, Adv Sci (Weinh), 11(36):e2401085. doi: 10.1002/advs.202401085. PMCID: PMC11423184  PubMed

West JJ, Golloshi R, Cho CY, Wang Y, Stevenson P, Stein-O’Brien G, Fertig EJ, Ewald AJ., 2024, Claudin 7 suppresses invasion and metastasis through repression of a smooth muscle actin program, J Cell Biol., 223(12):e202311002. doi: 10.1083/jcb.202311002. PMCID: PMC11450322  PubMed

Liu Q, Xiong J, Kim DW, Lee SS, Bell BJ, Alexandre C, Blackshaw S, Latremoliere A, Wu MN., 2024, An amygdalar oscillator coordinates cellular and behavioral rhythms, Neuron, S0896-6273(24)00609-3. doi: 10.1016/j.neuron.2024.08.013. PMID: 39303704  PubMed

Daitch AK, Smith EL, Goley ED., 2024, OpgH is an essential regulator of Caulobacter morphology, mBio., 15(9):e0144324. doi: 10.1128/mbio.01443-24. PMCID: PMC11389396  PubMed

Campbell A, Esser HF, Maxwell Burroughs A, Berninghausen O, Aravind L, Becker T, Green R, Beckmann R, Buskirk AR., 2024, The RNA helicase HrpA rescues collided ribosomes in E. coli, bioRxiv [Preprint], 2024.09.11.612461. doi: 10.1101/2024.09.11.612461. PMCID: PMC11419001  PubMed

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C., 2024, Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch, Nucleic Acids Res., 52(16):9978-9995. doi: 10.1093/nar/gkae698. Erratum in: Nucleic Acids Res. 2024 Sep 01:gkae751. doi: 10.1093/nar/gkae751. PMCID: PMC11381367  PubMed

Lee SS, Sweren E, Dare E, Derr P, Derr K, Wang CC, Hardesty B, Willis AA, Chen J, Vuillier JK, Du J, Wool J, Ruci A, Wang VY, Lee C, Iyengar S, Asami S, Daskam M, Lee C, Lee JC, Cho D, Kim J, Martinez-Peña EG, Lee SM, He X, Wakeman M, Sicilia I, Dobbs DT, van Ee A, Li A, Xue Y, Williams KL, Kirby CS, Kim D, Kim S, Xu L, Wang R, Ferrer M, Chen Y, Kang JU, Kalhor R, Kang S, Garza LA., 2024, The use of ectopic volar fibroblasts to modify skin identity, Science, 385(6713):eadi1650. doi: 10.1126/science.adi1650. PMCID: PMC11457755  PubMed

Murata D, Ito F, Tang G, Iwata W, Yeung N, West JJ, Ewald AJ, Wang X, Iijima M, Sesaki H., 2024, Mitochondria-targeted cancer analysis using survival and expression: Prioritizing mitochondrial targets that alleviate pancreatic cancer cell phenotypes, iScience, 27(9):110880. doi: 10.1016/j.isci.2024.110880. PMCID: PMC11416656  PubMed

Greene J, Snyder RA, Cotten KL, Huiszoon RC, Chu S, Braza RED, Chapin AA, Stine JM, Bentley WE, Ghodssi R, Davis KM., 2024, Yersinia pseudotuberculosis growth arrest during type-III secretion system expression is associated with altered ribosomal protein expression and decreased gentamicin susceptibility, bioRxiv [Preprint], 2024.09.02.610769. doi: 10.1101/2024.09.02.610769. PMCID: PMC11398311  PubMed

Ishida CT, Myers SL, Kubota CS, Shao W, McGuire MR, Liu C, Ewachiw TE, Mukhopadhyay D, Ke S, Wang H, Rasheed ZA, Anders RA, Espenshade PJ, 2024, SREBP-Dependent Regulation of Lipid Homeostasis Is Required for Progression and Growth of Pancreatic Ductal Adenocarcinoma, Cancer Res Commun., 4(9):2539-2552. doi: 10.1158/2767-9764.CRC-24-0120. PMCID: PMC11444119  PubMed

Smith JE, Wang KJ, Kennedy EM, Hakim JMC, So J, Beaver AK, Magesh A, Gilligan-Steinberg SD, Zheng J, Zhang B, Moorthy DN, Akin EH, Mwakibete L, Mugnier MR., 2024, DNA damage drives antigen diversification through mosaic Variant Surface Glycoprotein (VSG) formation in Trypanosoma brucei, bioRxiv [Preprint], 2024.03.22.582209. doi: 10.1101/2024.03.22.582209. PMCID: PMC11383311  PubMed

Shuler KT, Llamas-Rodriguez J, Levy-Myers R, Sockanathan S., 2024, The Six-Transmembrane Enzyme GDE2 Is Required for the Release of Molecularly Distinct Small Extracellular Vesicles from Neurons. Cells, 13(17):1414. doi: 10.3390/cells13171414. PMCID: PMC11394063  PubMed

Heitmann T, Liao G, Ernst G, Poslusney M, van Kralingen T, Li Y, Masi M, DePasquale M, Buchler I, Wei H, Carr GV, Shlevkov E, Lu M, Jessen H, Barrow JC., 2024, Identification and Characterization of a Blood-Brain Barrier Penetrant Inositol Hexakisphosphate Kinase (IP6K) Inhibitor, J Med Chem., 67(16):13639-13665. doi: 10.1021/acs.jmedchem.4c00190. PMID: 39096294  PubMed

T Ishida C, Kubota CS, Carlyle E, Tsukamoto T, Espenshade PJ., 2024, A High-Throughput Screening Platform Identifies FDA-Approved Drugs That Inhibit SREBP Pathway Activation, ACS Chem Biol., 19(8):1695-1704. doi: 10.1021/acschembio.4c00354. PMID: 39106256  PubMed

Mack J, Murray R, Lynch K, Arroyo-Currás N., 2024, 3D-printed electrochemical cells for multi-point aptamer-based drug measurements, Sens Diagn., 3(9):1533-1541. doi: 10.1039/d4sd00192c. PMCID: PMC11325214  PubMed

Dong D, Zhang Z, Li Y, Latallo MJ, Wang S, Nelson B, Wu R, Krishnan G, Gao FB, Wu B, Sun S., 2024, Poly-GR repeats associated with ALS/FTD gene C9ORF72 impair translation elongation and induce a ribotoxic stress response in neurons, Sci Signal, 17(848):eadl1030. doi: 10.1126/scisignal.adl1030. PMID: 39106320  PubMed

Wilkins HN, Knerler SA, Warshanna A, Ortiz RC, Haas K, Orsburn BC, Williams DW., 2024, Drug Metabolism and Transport Capacity of Endothelial Cells, Pericytes, and Astrocytes: Implications for CNS Drug Disposition, bioRxiv [Preprint], 2024.08.01.606165. doi: 10.1101/2024.08.01.606165. PMCID: PMC11326144  PubMed

Nguyen JMK, Liu Y, Nguyen L, Sidhaye VK, Robinson DN., 2024, Discovery and Quantitative Dissection of Cytokinesis Mechanisms Using Dictyostelium discoideum, Methods Mol Biol., 2024;2814:1-27. doi: 10.1007/978-1-0716-3894-1_1. PMID: 38954194  PubMed

Johnson BA, Liu AZ, Bi T, Dong Y, Li T, Zhou D, Narkar A, Wu Y, Sun SX, Larman TC, Zhu J, Li R., 2024, Simple aneuploidy evades p53 surveillance and promotes niche factor-independent growth in human intestinal organoids, Mol Biol Cell., 35(8):br15. doi: 10.1091/mbc.E24-04-0166. PMCID: PMC11321050  PubMed

Guo B, Ling W, Kwon SH, Panwar P, Ghazanfar S, Martinowich K, Hicks SC., 2024, Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities, ArXiv [Preprint]. arXiv:2408.00367v1. PMCID: PMC11312629  PubMed

Zhang N, Westerhaus A, Wilson M, Wang E, Goff L, Sockanathan S., 2024, Physiological regulation of neuronal Wnt activity is essential for TDP-43 localization and function, EMBO J., 43(16):3388-3413. doi: 10.1038/s44318-024-00156-8. PMCID: PMC11329687  PubMed

Imoto Y, Xue J, Luo L, Raychaudhuri S, Itoh K, Ma Y, Craft GE, Kwan AH, Ogunmowo TH, Ho A, Mackay JP, Ha T, Watanabe S, Robinson PJ., 2024, Dynamin 1xA interacts with Endophilin A1 via its spliced long C-terminus for ultrafast endocytosis, EMBO J., 43(16):3327-3357. doi: 10.1038/s44318-024-00145-x. PMCID: PMC11329700  PubMed

Park G, Patel AB, Wu C, Louder RK., 2024, Structures of H2A.Z-associated human chromatin remodelers SRCAP and TIP60 reveal divergent mechanisms of chromatin engagement., bioRxiv [Preprint], 2024.07.30.605802. doi: 10.1101/2024.07.30.605802. PMCID: PMC11312561  PubMed

He S, Huang Z, Liu Y, Ha T, Wu B., 2024, DNA break induces rapid transcription repression mediated by proteasome-dependent RNAPII removal, Cell Rep., 43(7):114420. doi: 10.1016/j.celrep.2024.114420. PMCID: PMC11337244  PubMed

Sinha NK, McKenney C, Yeow ZY, Li JJ, Nam KH, Yaron-Barir TM, Johnson JL, Huntsman EM, Cantley LC, Ordureau A, Regot S, Green R., 2024, The ribotoxic stress response drives UV-mediated cell death, Cell, 187(14):3652-3670.e40. doi: 10.1016/j.cell.2024.05.018. PMCID: PMC11246228  PubMed

Weinberg RL, Kim S, Pang Z, Awad S, Hanback T, Pan B, Bettin L, Chang D, Polydefkis MJ, Qu L, Caterina MJ., 2024, Pain Hypersensitivity in SLURP1 and SLURP2 Knock-out Mouse Models of Hereditary Palmoplantar Keratoderma, J Neurosci., 44(28):e0260232024. doi: 10.1523/JNEUROSCI.0260-23.2024. PMCID: PMC11236581  PubMed

Guerrero Zuniga A, Aikin TJ, McKenney C, Lendner Y, Phung A, Hook PW, Meltzer A, Timp W, Regot S., 2024, Sustained ERK signaling promotes G2 cell cycle exit and primes cells for whole-genome duplication, Dev Cell., 59(13):1724-1736.e4. doi: 10.1016/j.devcel.2024.03.032. PMCID: PMC11233237  PubMed

Carrillo E, Montaño Romero A, Gonzalez CU, Turcu AL, Chen SR, Chen H, Pan HL, Vázquez S, Twomey EC, Jayaraman V., 2024, Memantine Inhibits Calcium-Permeable AMPA Receptors, bioRxiv [Preprint], 2024.07.02.601784. doi: 10.1101/2024.07.02.601784. PMCID: PMC11245036  PubMed

Scholl A, Liu Y, Seydoux G., 2024, Caenorhabditis elegans germ granules accumulate hundreds of low translation mRNAs with no systematic preference for germ cell fate regulators, Development, 151(13):dev202575. doi: 10.1242/dev.202575. PMCID: PMC11266749  PubMed

Barrows JM, Talavera-Figueroa BK, Payne IP, Smith EL, Goley ED., 2024, GTPase activity regulates FtsZ ring positioning in Caulobacter crescentus, Mol Biol Cell., 35(7):ar97. doi: 10.1091/mbc.E23-09-0365. PMID: 38758654  PubMed

Kubota CS, Myers SL, Seppälä TT, Burkhart RA, Espenshade PJ., 2024, In vivo CRISPR screening identifies geranylgeranyl diphosphate as a pancreatic cancer tumor growth dependency, Mol Metab., 85:101964. doi: 10.1016/j.molmet.2024.101964. PMCID: PMC11217740  PubMed

Senoo N, Chinthapalli DK, Baile MG, Golla VK, Saha B, Oluwole AO, Ogunbona OB, Saba JA, Munteanu T, Valdez Y, Whited K, Sheridan MS, Chorev D, Alder NN, May ER, Robinson CV, Claypool SM., 2024, Functional diversity among cardiolipin binding sites on the mitochondrial ADP/ATP carrier, EMBO J., 43(14):2979-3008. doi: 10.1038/s44318-024-00132-2. PMCID: PMC11251061  PubMed

Baghel MS, Burns GD, Tsapatsis M, Mallika AP, Cruz ALF, Cao T, Chen XK, Rosa I, Marx SR, Ye Y, Sun S, Li T, Wong PC., 2024, Depletion of TDP-43 exacerbates tauopathy-dependent brain atrophy by sensitizing vulnerable neurons to caspase 3-mediated endoproteolysis of tau in a mouse model of Multiple Etiology Dementia, bioRxiv [Preprint]., 2024.06.26.600814. doi: 10.1101/2024.06.26.600814. PMCID: PMC11230425  PubMed

Huang Z, Zhou Y, Liu Y, Wang J., 2024, Protocol to identify DNA-binding proteins recognizing nucleotide repeat dsDNAs, STAR Protoc., 5(2):103013. doi: 10.1016/j.xpro.2024.103013. PMCID: PMC11021352  PubMed

Wang Y, Ruan L, Zhu J, Zhang X, Chang AC, Tomaszewski A, Li R., 2024, Metabolic regulation of misfolded protein import into mitochondria, Elife, 12:RP87518. doi: 10.7554/eLife.87518. PMCID: PMC11189628  PubMed

Gao CW, Lin W, Riddle RC, Chopra S, Kim J, Boukas L, Hansen KD, Björnsson HT, Fahrner JA., 2024, Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1, PLoS Genet., 20(6):e1011310. doi: 10.1371/journal.pgen.1011310. PMCID: PMC11192384  PubMed

Liu HB, Dong T, Deng L, Zhou C, Tang F, Margolis RL, Li PP., 2024, Generation of a human induced pluripotent stem cell line JHUi004-A with heterozygous mutation for spinocerebellar ataxia type 12 using genome editing, Stem Cell Res., 77:103441. doi: 10.1016/j.scr.2024.103441. PMID: 38759410  PubMed

Liu HB, Dong T, Deng L, Zhou C, Tang F, Margolis RL, Li PP., 2024, Generation of a human induced pluripotent stem cell line JHUi004-A with heterozygous mutation for spinocerebellar ataxia type 12 using genome editing, Stem Cell Res., 77:103441. doi: 10.1016/j.scr.2024.103441. PMID: 38759410  PubMed

Blawski R, Vokshi BH, Guo X, Kittane S, Sallaku M, Chen W, Gjyzari M, Cheung T, Zhang Y, Simpkins C, Zhou W, Kulick A, Zhao P, Wei M, Shivashankar P, Prioleau T, Razavi P, Koche R, Rebecca VW, de Stanchina E, Castel P, Chan HM, Scaltriti M, Cocco E, Ji H, Luo M, Toska E., 2024, Methylation of the chromatin modifier KMT2D by SMYD2 contributes to therapeutic response in hormone-dependent breast cancer, Cell Rep., 43(5):114174. doi: 10.1016/j.celrep.2024.114174. PMID: 38700982  PubMed

Zhou C, Tang F, Dong T, Liu HB, Deng L, Margolis RL, Li PP., 2024, Role of Bβ1 overexpression in the pathogenesis of SCA12, Mov Disord., doi: 10.1002/mds.29839. PMID: 38798069  PubMed

Huuki-Myers LA, Spangler A, Eagles NJ, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A; PsychENCODE Consortium†; Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR; PsychENCODE Consortium, 2024, A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science, 384(6698):eadh1938. doi: 10.1126/science.adh1938. PMID: 38781370  PubMed

Sullivan JM, Bagnell AM, Alevy J, Avila EM, Mihaljević L, Saavedra-Rivera PC, Kong L, Huh JS, McCray BA, Aisenberg WH, Zuberi AR, Bogdanik L, Lutz CM, Qiu Z, Quinlan KA, Searson PC, Sumner CJ., 2024, Gain-of-function mutations of TRPV4 acting in endothelial cells drive blood-CNS barrier breakdown and motor neuron degeneration in mice, Sci Transl Med., 16(748):eadk1358. doi: 10.1126/scitranslmed.adk1358. PMID: 38776392  PubMed

Chai Z, Ye Y, Silverman D, Rose K, Madura A, Reed RR, Chen J, Yau KW., 2024, Dark continuous noise from mutant G90D-rhodopsin predominantly underlies congenital stationary night blindness, Proc Natl Acad Sci U S A, 121(21):e2404763121. doi: 10.1073/pnas.2404763121. PMCID: PMC11127052  PubMed

Brown MP, Verma S, Palmer I, Zuniga AG, Rosensweig C, Keles MF, Wu MN., 2023, A subclass of evening cells promotes the switch from arousal to sleep at dusk, bioRxiv [Preprint], 2023.08.28.555147. doi: 10.1101/2023.08.28.555147. Update in: Curr Biol. 34(10):2186-2199.e3. doi: 10.1016/j.cub.2024.04.039. PMCID: PMC10491161  PubMed

Liu Y, Fan M, Yang J, Mihaljević L, Chen KH, Ye Y, Sun S, Qiu Z., 2024, KAT6A deficiency impairs cognitive functions through suppressing RSPO2/Wnt signaling in hippocampal CA3, Sci Adv., 10(20):eadm9326. doi: 10.1126/sciadv.adm9326. PMCID: PMC11100567  PubMed

Karimian K, Groot A, Huso V, Kahidi R, Tan KT, Sholes S, Keener R, McDyer JF, Alder JK, Li H, Rechtsteiner A, Greider CW., 2024, Human telomere length is chromosome end-specific and conserved across individuals. Science, 384(6695):533-539. doi: 10.1126/science.ado0431. PMID: 38603523  PubMed

McKenney C, Lendner Y, Guerrero Zuniga A, Sinha N, Veresko B, Aikin TJ, Regot S., 2024, CDK4/6 activity is required during G₂ arrest to prevent stress-induced endoreplication, Science, 384(6695):eadi2421. doi: 10.1126/science.adi2421. PMID: 38696576  PubMed

Nelson ED, Tippani M, Ramnauth AD, Divecha HR, Miller RA, Eagles NJ, Pattie EA, Kwon SH, Bach SV, Kaipa UM, Yao J, Kleinman JE, Collado-Torres L, Han S, Maynard KR, Hyde TM, Martinowich K, Page SC, Hicks SC., 2024, An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus, bioRxiv [Preprint], 2024.04.26.590643. doi: 10.1101/2024.04.26.590643. PMCID: PMC11071618  PubMed

Smith EL, Goley ED., 2024, House of CarDs: Functional insights into the transcriptional regulator CdnL., Mol Microbiol., doi: 10.1111/mmi.15268. PMID: 38664995  PubMed

Villalón Landeros E, Kho SC, Church TR, Brennan A, Türker F, Delannoy M, Caterina MJ, Margolis SS., 2024, The nociceptive activity of peripheral sensory neurons is modulated by the neuronal membrane proteasome, Cell Rep., 43(4):114058. doi: 10.1016/j.celrep.2024.114058. PMID: 38614084  PubMed

Kiraly JK, Harris SC, Al-Khindi T, Dunn FA, Kolodkin AL.. 2024, PyOKR: A Semi-Automated Method for Quantifying Optokinetic Reflex Tracking Ability, J Vis Exp., (206). doi: 10.3791/66779. PMID: 38682904  PubMed

Jeon SM, Pradeep A, Chang D, McDonough L, Chen Y, Latremoliere A, Crawford LK, Caterina MJ., 2024, Skin Reinnervation by Collateral Sprouting Following Spared Nerve Injury in Mice, J Neurosci., 44(15):e1494232024. doi: 10.1523/JNEUROSCI.1494-23.2024. PMCID: PMC11007315  PubMed

Smith EL, Panis G, Woldemeskel SA, Viollier PH, Chien P, Goley ED., 2024, Regulation of the transcription factor CdnL promotes adaptation to nutrient stress in Caulobacter, PNAS Nexus., 3(4):pgae154. doi: 10.1093/pnasnexus/pgae154. PMCID: PMC11034885  PubMed

Maden SK, Huuki-Myers LA, Kwon SH, Collado-Torres L, Maynard KR, Hicks SC., 2024, lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression, bioRxiv [Preprint]. 2024.04.04.588105. doi: 10.1101/2024.04.04.588105. PMCID: PMC11014536  PubMed

Dong Y, Johnson BA, Ruan L, Zeineldin M, Bi T, Liu AZ, Raychaudhuri S, Chiu I, Zhu J, Smith B, Zhao N, Searson P, Watanabe S, Donowitz M, Larman TC, Li R., 2024, Disruption of epithelium integrity by inflammation-associated fibroblasts through prostaglandin signaling, Sci Adv., 10(14):eadj7666. doi: 10.1126/sciadv.adj7666. PMCID: PMC10990275  PubMed

Daudelin D, Westerhaus A, Zhang N, Leyder E, Savonenko A, Sockanathan S., 2024, Loss of GDE2 leads to complex behavioral changes including memory impairment, Behav Brain Funct., 20(1):7. doi: 10.1186/s12993-024-00234-1. PMCID: PMC10993612  PubMed

Church TR, Brennan A, Margolis SS., 2024, Hats off to 20S proteasome substrate discovery, Mol Syst Biol., 20(4):293-295. doi: 10.1038/s44320-024-00028-7. PMCID: PMC10987484  PubMed

Blake LA, Watkins L, Liu Y, Inoue T, Wu B., 2024, A rapid inducible RNA decay system reveals fast mRNA decay in P-bodies, Nat Commun., 15(1):2720. doi: 10.1038/s41467-024-46943-z. PMCID: PMC10979015  PubMed

Ling YH, Ye Z, Liang C, Yu C, Park G, Corden JL, Wu C., 2024, Disordered C-terminal domain drives spatiotemporal confinement of RNAPII to enhance search for chromatin targets, Nat Cell Biol., 26(4):581-592. doi: 10.1038/s41556-024-01382-2. PMID: 38548891  PubMed

Wu Z, Kusick GF, Berns MMM, Raychaudhuri S, Itoh K, Walter AM, Chapman ER, Watanabe S., 2024, Synaptotagmin 7 docks synaptic vesicles to support facilitation and Doc2α-triggered asynchronous release, Elife, 12:RP90632. doi: 10.7554/eLife.90632. PMCID: PMC10972563  PubMed

Workman RE, Stoltzfus MJ, Keith NC, Euler CW, Bondy-Denomy J, Modell JW., 2024, Anti-CRISPR proteins trigger a burst of CRISPR-Cas9 expression that enhances phage defense, Cell Rep., 43(3):113849. doi: 10.1016/j.celrep.2024.113849. PMID: 38427560  PubMed

Matsubayashi HT, Mountain J, Takahashi N, Deb Roy A, Yao T, Peterson AF, Saez Gonzalez C, Kawamata I, Inoue T., 2024, Non-catalytic role of phosphoinositide 3-kinase in mesenchymal cell migration through non-canonical induction of p85β/AP2-mediated endocytosis, Nat Commun., 15(1):2612. doi: 10.1038/s41467-024-46855-y. PMCID: PMC10960865  PubMed

Waechtler BE, Jayasankar R, Morin EP, Robinson DN., 2024, Benefits and challenges of reconstituting the actin cortex, Cytoskeleton (Hoboken), doi: 10.1002/cm.21855. PMID: 38520148  PubMed

Jo MH, Meneses P, Yang O, Carcamo CC, Pangeni S, Ha T., 2024, Determination of single-molecule loading rate during mechanotransduction in cell adhesion, Science, 383(6689):1374-1379. doi: 10.1126/science.adk6921. PMCID: PMC10977658  PubMed

Hopkins MJ, Moore BN, Jeffery JL, Young AS., 2024, Demystifying the ‘hidden curriculum’ for minoritized graduate students, Elife, 13:e94422. doi: 10.7554/eLife.94422. PMCID: PMC10932539  PubMed

Curinha A, Huang Z, Anglen T, Strong MA, Gliech CR, Jewett CE, Friskes A, Holland AJ., 2024, Centriole structural integrity defects are a crucial feature of Hydrolethalus Syndrome, bioRxiv [Preprint], 2024.03.06.583733. doi: 10.1101/2024.03.06.583733. PMCID: PMC10942441  PubMed

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Bowman CE, Wolfgang MJ., 2019 Jan, “Role of the malonyl-CoA synthetase ACSF3 in mitochondrial metabolism.” Adv Biol Regul. 71:34-40. Review. PMCID: PMC6347522 PubMed

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Shen, Y., Stracquadanio, G., Wang, Y., Yang, K., Mitchell, LA., Xue, Y., Cai, Y., Chen, T., Dymond, JS., Kang, K., Gong, J., Zeng, X., Zhang, Y., Li, Y., Feng, Q., Xu, X., Wang, J., Wang, J., Yang, H., Boeke, JD. and Bader, JS., 2016, “SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes,” Genome Res. 26(1):36-49. PMID: 26566658 ​PubMed

Lambrus, BG., Daggubati, V., Uetake, Y., Scott, PM., Clutario, KM., Sluder, G. and Holland, AJ., 2016, “A USP28-53BP1-p53-p21 signaling axis arrestsgrowth after centrosome loss or prolonged mitosis,” J Cell Biol. 214(2):143-53. PMID: 27432896 PubMed

Shamir, ER., Coutinho, K., Georgess, D., Auer, M. and Ewald, AJ., 2016, “Twist1+ epithelial cells retain adhesive and proliferative capacity throughout dissemination,” Biol Open. pii: bio.019703. PMID: 27402962 PubMed

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Ellison, D., Mugler, A., Brennan, MD., Lee, SH., Huebner, RJ., Shamir, ER., Woo, LA., Kim, J., Amar, P., Nemenman, I., Ewald, AJ. and Levchenko, A., 2016, “Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis,” Proc Natl Acad Sci U S A. 113(6):E679-88. PMID: 26792522 PubMed​

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Freed, D. and Pevsner, J., 2016, “The Contribution of Mosaic Variants to Autism Spectrum Disorder,” PLoS Genet. 12(9):e1006245. doi: 10.1371/journal.pgen.1006245. PMID: 27632392 PubMed

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Moreno, A., Froehlig, JR., Bachas, S., Gunio, D., Alexander, T., Vanya, A. and Wade, H., 2016, “Solution Binding and Structural Analyses Reveal Potential Multidrug Resistance Functions for SAV2435 and CTR107 and Other GyrI-like Proteins,” Biochemistry. 55(34):4850-63. 18. PMID: 27505298 PubMed

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Yuan, G., Peng, YJ., Khan, SA., Nanduri, J., Singh, A., Vasavda, C., Semenza, GL., Kumar, GK., Snyder, SH. and Prabhakar, NR., 2016, “H2S production by reactive oxygen species in the carotid body triggers hypertension in a rodent model of sleep apnea,” Sci Signal. 9(441):ra80. PMID: 27531649 PubMed

Laskey, SB., Pohlmeyer, CW., Bruner, KM. and Siliciano, RF., 2016, “Evaluating Clonal Expansion of HIV-Infected Cells: Optimization of PCR Strategies to Predict Clonality,”  PLoS Pathog. 12(8):e1005689. PMCID:PMC4975415 PubMed

Oh, Y., Cho, GS., Li, Z., Hong, I., Zhu, R., Kim, MJ., Kim, YJ., Tampakakis, E., Tung, L., Huganir, R., Dong, X., Kwon, C. and Lee, G., 2016, “Functional Coupling with Cardiac Muscle Promotes Maturation of hPSC-Derived Sympathetic Neurons,” Cell Stem Cell. PMID: 27320040 PubMed

Lee, J., Choi, J., Scafidi, S. and Wolfgang, MJ., 2016, “Hepatic Fatty Acid Oxidation Restrains Systemic Catabolism during Starvation,” Cell Rep. 16(1):201-12. PMID: 27320917  PubMed

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Campbell, DP., Chrysostomou, E. and Doetzlhofer, A., 2016, “Canonical Notch signaling plays an instructive role in auditory supporting cell development,” Sci Rep. 6:19484. PMCID: PMC472625 PubMed

Calzada, E., Onguka, O. and Claypool, SM., 2016, “Phosphatidylethanolamine Metabolism in Health and Disease,” Int Rev Cell Mol Biol. 321:29-88. PubMed

Ellison, D., Mugler, A., Brennan, MD., Lee, SH., Huebner, RJ., Shamir, ER., Woo, LA., Kim, J., Amar, P., Nemenman, I., Ewald, AJ. and Levchenko, A., 2016, “Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis,” Proc Natl Acad Sci U S A. pii: 201516503. PubMed

Goldschmidt, HL., Tu-Sekine, B., Volk, L., Anggono, V., Huganir, RL. and Raben, DM., 2016,  “DGKθ Catalytic Activity Is Required for Efficient Recycling of Presynaptic Vesicles at Excitatory Synapses,” Cell Rep. 14(2):200-7. PubMed

Mirsafian, H., Manda, SS., Mitchell, CJ., Sreenivasamurthy, S., Ripen, AM., Mohamad, SB., Merican, AF., and Pandey, A., 2016,  “Long non-coding RNA expression in human primary monocytes,” Genomics. pii: S0888-7543(16)30002-7. PubMed

Wasilewski, LN., El-Diwany, R., Munshaw, S., Snider, AE., Brady, JK., Osburn, WO., Ray, SC., and Bailey, JR., 2016, “A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies,” J Virol. pii: JVI.02837-15. PubMed

Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS. and Pomerantz, JL., 2015, “Negative Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181,” Mol Cell Biol. pii: MCB.00876-15.  PubMed

Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS., and Pomerantz, JL., 2016,  “Correction for Pedersen et al., Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181,” Mol Cell Biol. 36(8):1322.​​ PubMed

Jattani, RP., Tritapoe, JM., and Pomerantz, JL., 2016, “Intramolecular Interactions and Regulation of Cofactor Binding by the Four Repressive Elements in the Caspase Recruitment Domain-Containing Protein 11 (CARD11) Inhibitory Domain,” J Biol Chem. pii: jbc.M116.717322.​​PubMed

Lee, J., Choi, J., Aja, S., Scafidi, S., and Wolfgang, MJ., 2016, “Loss of Adipose Fatty Acid Oxidation Does Not Potentiate Obesity at Thermoneutrality,” Cell Rep. 14(6):1308-16.​ PMCID: PMC4758873 PubMed

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Shirley, MD., Frelin, L., López, JS., Jedlicka, A., Dziedzic, A., Frank-Crawford, MA., Silverman, W., Hagopian, L., and Pevsner, J., 2016, “Copy Number Variants Associated with 14 Cases of Self-Injurious Behavior,” PLoS One. 11(3):e0149646.​ ​ PubMed

Meier, EL., Razavi, S., Inoue, T., and Goley, ED., 2016, “A novel membrane anchor for FtsZ is linked to cell wall hydrolysis in Caulobacter crescentus,” Mol Microbiol.​ ​ PubMed

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Lei, X., Rodriguez, S., Petersen, PS., Seldin, MM., Bowman, CE., Wolfgang, MJ., and Wong, GW., 2016, “Loss of CTRP5 improves insulin action and hepatic steatosis,” Am J Physiol Endocrinol Metab. ajpendo.00010.2016. PubMed

Bowman, CE., Zhao, L., Hartung, T., and Wolfgang, MJ., 2016, “Requirement for the Mitochondrial Pyruvate Carrier in Mammalian Development Revealed by a Hypomorphic Allelic Series,” Mol Cell Biol. 36(15):2089-104. PMCID: PMC4946427 PubMed 

Lin, X., Steinberg, S., Kandasamy, SK., Afzal, J., Mbiyangandu, B., Liao, SE., Guan, Y., Corona-Villalobos, CP., Matkovich, SJ.,  Epstein, N., Tripodi, D., Huo, Z., Cutting, G., Abraham, TP., Fukunaga, R., and Abraham, MR., 2016, “Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis,” PLoS One. 11(5):e0156065. eCollection 2016.​  PubMed

Pokorná, L., Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J. and Balážová, M., 2016, “Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function,” Biochim Biophys Acta. 1857(1):34-45. PMCID: PMC4690203  PubMed

Mitchell, CJ., Kim, MS., Na, CH., and Pandey, A., 2016, ” PyQuant: a versatile framework for analysis of quantitative mass spectrometry data,” Mol Cell Proteomics. pii: mcp.O115.056879  15(8):2829-38. PMCID: PMC4974355  PubMed​

Lee, J., Choi, J., Wong, GW., and Wolfgang, MJ., 2016, “Neurometabolic roles of ApoE and Ldl-R in mouse brain,” J Bioenerg Biomembr. ​48(1):13-21. PMCID: PMC4733629  PubMed

Maruotti, J., Sripathi, SR., Bharti, K., Fuller, J., Wahlin, KJ., Ranganathan, V., Sluch, VM., Berlinicke, CA., Davis, J., Kim, C., Zhao, L., Wan, J., Qian, J., Corneo, B., Temple, S., Dubey, R., Olenyuk, BZ., Bhutto, I., Lutty, GA., and Zack, DJ., 2015, “Small-molecule-directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells,” Proc Natl Acad Sci U S A. 112(35):10950-5.​ PMCID: PMC4568212  PubMed

Lin, Q., Jia, B., Mitchell, LA., Luo, J., Yang, K., Zeller, KI., Zhang, W., Xu, Z., Stracquadanio, G., Bader, JS., Boeke, JD., and Yuan, YJ., 2015, “RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae,” ACS Synth Biol. 4(3):213-20.​ PubMed

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Phua, SC., Lin, YC. and Inoue, T., 2015, “An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli,” Cell Calcium, 58: 415-422, Review. PMCID: PMC4564334 [Available on 2016-10-01] PubMed

Koutmou, KS., Schuller, AP., Brunelle, JL., Radhakrishnan, A., Djuranovic, S. and Green, R., 2015, “Ribosomes slide on lysine-encoding homopolymeric A stretches,” Elife, 4: e05534. PMCID: PMC4363877 PubMed

Goodrich, AC. and Frueh, DP., 2015, “A Nuclear Magnetic Resonance Method for Probing Molecular Influences of Substrate Loading in Nonribosomal Peptide Synthetase Carrier Proteins. Biochemistry, 54, 1154-6.  PMCID: PMC4378656 PubMed

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Sluch, VM., Davis, CH., Ranganathan, V., Kerr, JM., Krick, K., Martin, R., Berlinicke, CA., Marsh-Armstrong, N., Diamond, JS., Mao, HQ. and Zack, DJ., 2015, “Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line,” Sci Rep. 5:16595. PMCID: PMC4643248 PubMed

Cheng, YL. and Andrew, DJ., 2015, “Extracellular Mipp1 Activity Confers Migratory Advantage to Epithelial Cells during Collective Migration,” Cell Rep. 13(10):2174-88. PMCID: PMC4776642. PubMed

Goodrich, AC., Harden, BJ. and Frueh, DP., 2015, “Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts,” J Am Chem Soc. PMID: 26334259​ PubMed

Sun, G. j, Zhou, Y., Ito, S., Bonaguidi, M. a, O’Brien, G. s, Kawasaki, N., Modak, N., Zhu, Y., Ming, G.-L., Song, H., “Latent tri-lineage potential of adult neural stem cells in the hippocampus revealed by Nf1 inactivation”, Nature Neuroscience, 2015 Dec;18(12):1722-4. PMID: 26523645 PubMed

Ward, MD. and Leahy, DJ., 2015, “Kinase activator-receiver preference in ErbB heterodimers is determined by intracellular regions and is not coupled to extracellular asymmetry,” J Biol Chem. 290(3):1570-9. PMCID: PMC4340403 PubMed

Deng, K., Pertea, M., Rongvaux, A., Wang, L., Durand, CM., Ghiaur, G., Lai, J., McHugh, HL., Hao, H., Zhang, H., Margolick, JB., Gurer, C., Murphy, AJ., Valenzuela, DM., Yancopoulos, GD., Deeks, SG., Strowig, T., Kumar, P., Siliciano, JD., Salzberg, SL., Flavell, RA., Shan, L. and Siliciano, RF, 2015, “Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations,” Nature.15;517(7534):381-5. PMCID: PMC4406054  PubMed

Multhaup, ML., Seldin, MM., Jaffe, AE., Lei, X., Kirchner, H., Mondal, P., Li, Y., Rodriguez, V., Drong, A., Hussain, M., Lindgren, C., McCarthy, M., Näslund, E., Zierath, JR., Wong, GW. and Feinberg, AP., 2015, “Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes,” Cell Metab. 21(1):138-49. PMCID: PMC4340475  PubMed

Dancy, BM. and Cole, PA., 2015, “Protein Lysine Acetylation by p300/CBP,” Chem Rev, 115(6):2419-52. PMCID: PMC4378506 PubMed

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Harr, JC.*, Luperchio, TR.*, Wong, X.*, Cohen, E*., Wheelan, SJ. and Reddy, KL., 2015, “Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins,” J Cell Biol. 208(1):33-52. PMCID: PMC4284222 *equal contribution.​ PubMed​

Surcel, A., Ng, WP., West-Foyle, H., Zhu, Q., Ren, Y., Avery, LB., Krenc, AK., Meyers, DJ., Rock, RS., Anders, RA., Freel, Meyers, CL. and Robinson, DN., 2015, “Pharmacological activation of myosin II paralogs to correct cell mechanics defects,” Proc Natl Acad Sci USA, 112(5):1428-33.  PMCID: PMC4321244 PubMed​

Clister, T., Mehta, S. and Zhang, J., 2015, “Single-cell Analysis of G-protein Signal Transduction,” J Biol Chem, 290(11):6681-8. PMCID: PMC4358091 PubMed

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Cox, E., Uzoma, I., Guzzo, C., Jeong, JS., Matunis, M., Blackshaw, S. and Zhu, H., 2015, “Identification of SUMO E3 Ligase-Specific Substrates Using the HuProt Human Proteome Microarray,” Methods Mol Biol. 1295:455-63. PMCID: unknown PubMed

Zhou, X., Clister, TL., Lowry, PR., Seldin, MM., Wong, GW. and Zhang, J., 2015, “Dynamic Visualization of mTORC1 Activity in Living Cells,” Cell Rep. pii: S2211-1247(15)00177-1. PMCID: PMC4567530  PubMed

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Deng, H., Wang, W., Yu, J., Zheng, Y., Qing, Y., and Pan, D., 2015, “Spectrin regulates Hippo signaling by modulating cortical actomyosin activity,”  ELife, 4:e06567.  PMCID: PMC4412106  PubMed

Yoo, SW., Motari, MG., Susuki, K., Prendergast, J., Mountney, A., Hurtado, A. and Schnaar, RL., 2015 “Sialylation regulates brain structure and function,” FASEB J. 29(7):3040-53. PMCID: PMC4478807 PubMed​

Metcalf, Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL. and Blankson, JN., 2015, “A murine viral outgrowth assay to detect residual HIV-1 in patients with undetectable viral loads,” J Infect Dis. 212:1387-1396. PMCID: PMC4601916 ​ PubMed

Onguka, O., Calzada, E., Ogunbona, OB. and Claypool, SM., 2015, “Phosphatidylserine Decarboxylase 1 Autocatalysis and Function Does Not Require a Mitochondrial-specific Factor,” J Biol Chem, 290: 12744-52  PMCID: PMC4432291  PubMed​

Li, Z., He, SQ., Tseng, PY., Xu, Q., Tiwari, V., Yang, F., Shu, B., Zhang, T., Tang, Z., Raja, SN., Wang, Y., Dong, X. and Guan, Y., 2015, “The inhibition of high-voltage-activated calcium current by activation of MrgC11 involves phospholipase C-dependent mechanisms,” Neuroscience, 300:393-403. PMCID: PMC4485588  PubMed​

Zhang, W., Wu, J., Ward, MD., Yang, S., Chuang, YA., Xiao, M., Li, R., Leahy, DJ. and Worley, PF., 2015, “Structural basis of arc binding to synaptic proteins: implications for cognitive disease.” Neuron. 22;86(2):490-500. PMCID: PMC4409568 PubMed

Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, “IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes,” Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknownPubMed

Hasan, S., Hétié, P amd Matunis, EL., 2015, “Niche signaling promotes stem cell survival in the Drosophila testis via the JAK-STAT target DIAP1,” Dev Biol, 404(1):27-39 PMCID: PMC4469572 PubMed

Westerbeck, JW. and Machamer, CE., 2015, “A Coronavirus E Protein is Present in Two Distinct Pools with Different Effects on Assembly and the Secretory Pathway,” J Virol., 89:18.  PMCID: PMC4542375  PubMed

Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, “Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina,” PLoS One. 10(12):e0143650.​ ​ PubMed

Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., and Chen, X., 2015, “An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation,” Cell Rep. 13(2):315-25. PMCID: PMC4607668 PubMed

Subramanian, M., Timmerman, CK., Schwartz, J.L., Pham, DL. and Meffert, MK., 2015, “Characterizing autism spectrum disorders by key biochemical pathways,” Front Neurosci. 9:313.  Review. PMCID: PMC4586332 . PubMed

Lambrus, BG., Uetake, Y., Clutario, KM., Daggubati, V., Snyder, M., Sluder, G. and Holland, AJ., 2015, “p53 protects against genome instability following centriole duplication failure,” J Cell Biol., 210(1):63-77. PMCID: PMC4494000  PubMed

Hobbs, RP., DePianto, DJ., Jacob, JT., Han, MC., Chung, BM., Batazzi, AS., Poll, BG., Guo, Y., Han, J., Ong, S., Zheng, W., Taube, JM., Čiháková, D., Wan, F. and Coulombe, PA. 2015, “Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes,” Nat Genet. 47(8):933-8. PMCID: PMC4520766 ​PubMed​

Moore,CD.*, Ajala, OZ.* and Zhu, H., 2015, “Applications in high-content functional protein microarrays,” Curr Opin Chem Biol. 30:21-27.  Review. *equal contribution PubMed

Echeverria, I., Liu, Y., Gabelli, SB., and Amzel, LM., 2015, “Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α,” FEBS J. 282(18):3528-42.​ PMCID: PMC4573839 PubMed

Margolis, SS., Sell, GL., Zbinden, MA., and Bird, LM., 2015, “Angelman Syndrome,” Neurotherapeutics. 12(3):641-50.​ ​ PubMed

Ellis, JM., Bowman, CE. and Wolfgang, MJ., 2015, “Metabolic and tissue-specific regulation of acyl-CoA metabolism,” PLoS One. 10(3):e0116587.​ ​ PubMed

Yuan, G.*, Vasavda, C.*, Peng, YJ.*, Makarenko, VV.*, Raghuraman, G., Nanduri, J., Gadalla, MM., Semenza, GL., Kumar, GK., Snyder, SH. and Prabhakar, NR., 2015, “Protein kinase G-regulated production of H2S governs oxygen sensing,” Sci Signal. 8(373):ra37. *equal contribution  PubMed​

Mohammad, F., Woolstenhulme, CJ., Green, R., and Buskirk, AR., 2015, “Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling,” Cell Rep. pii: S2211-1247(15)01529-6.​  PubMed

Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL., and Blankson, JN., 2015, “A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads,” J Infect Dis. 212(9):1387-96. PubMed

de la Peña, AH., Suarez, A., Duong-Ly, KC., Schoeffield, AJ., Pizarro-Dupuy, MA., Zarr, M., Pineiro, SA., Amzel, LM. and Gabelli, SB., 2015, “Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus,” PLoS One, PMID: 26524597 PubMed

Baras, AS., Mitchell, CJ., Myers, JR., Gupta, S., Weng, LC., Ashton, JM., Cornish, TC., Pandey, A. and  Halushka, MK., 2015, “miRge – A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy,” PLoS One. PMID: 26571139  PubMed

Phua, SC., Lin, YC. and Inoue, T., 2015, “An intelligent nano-antenna: Primary cilium harnesses TRP channels to decode polymodal stimuli,” Cell Calcium. 58(4):415-22. Review. PMID: 25828566 PubMed​

Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., Chen, X., 2015, An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation. Cell Rep. 13(2):315-25. PMID: 26440886  PubMed

Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, “IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes,” Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknown PubMed

Greenspan, LJ., de Cuevas, M. and Matunis, E., 2015, “Genetics of gonadal stem cell renewal,” Annu Rev Cell Dev Biol. 31:291-315. PMID: 26355592 PubMed​

Lee, CF., Lo, YC., Cheng, CH., Furtmüller, GJ., Oh, B., Andrade-Oliveira, V., Thomas, AG., Bowman, CE., Slusher, BS., Wolfgang, MJ., Brandacher, G., Powell, JD., 2015, “Preventing Allograft Rejection by Targeting Immune Metabolism,” Cell Rep. 13(4):760-70. PMID: 26489460 PubMed

Mitchell, CJ., Getnet, D., Kim, MS., Manda, SS., Kumar, P., Huang, TC., Pinto, SM., Nirujogi, RS., Iwasaki, M., Shaw, PG., Wu, X., Zhong, J., Chaerkady, R., Marimuthu, A., Muthusamy, B., Sahasrabuddhe, NA., Raju, R., Bowman, C., Danilova, L., Cutler, J., Kelkar, DS., Drake, CG., Prasad, TS., Marchionni, L., Murakami, PN., Scott, AF., Shi, L., Thierry-Mieg, J., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. and Pandey, A., 2015, “A multi-omic analysis of human naïve CD4+ T cells,” BMC Syst Biol. 9:75. PMID: 26542228 PubMed

Goodrich, A.C., Nichols, S.R., and Frueh, D.P, 2014, “Resonance Assignments and Structure Determination of Large and Challenging Proteins,” Encyclopedia of Magnetic Resonance. 3. 

Zhang, H., Zou, B., Du, F., Xu, K. and Li, M., 2014, “Reporting Sodium Channel Activity using Calcium Flux: Pharmacological Promiscuity of Cardiac Nav1.5,” Mol Pharmacol.87(2):207-17  PMCID: PMC4293450 PubMed

Van den Elzen, A.M.G., Schuller, A., Green, R. and Séraphin, B., 2014, “Dom34-Hbs1 mediated dissociation of inactive 80S ribosomes promotes restart of translation after stress.,” EMBO J. 33, 265-276 (2014). PMCID: PMC3989619 ​PubMed

Davis, C.-H.O., Kim, K.-Y., Bushong, E. a, Mills, E. a, Boassa, D., Shih, T., Kinebuchi, M., Phan, S., Zhou, Y., Bihlmeyer, N. a, Nguyen, J.V., Jin, Y., Ellisman, M.H., Marsh-Armstrong, N., “Transcellular degradation of axonal mitochondria”, Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9633-8. PMID: 24979790 PubMed

Wang, JT. and Seydoux, G., 2014, “P granules,” Curr Biol. 24(14):R637-8. PubMed

Schaughency, P., Merran, J., and Corden, JL., 2014, “Genome-wide mapping of yeast RNA polymerase II termination,” PLoS Genet. 10(10):e1004632.​ PubMed

Bruner, JK., Zou, B., Zhang, H., Zhang, Y., Schmidt, K. and Li, M., 2014, “Identification of novel small molecule modulators of K2P18.1 two-pore potassium channel,” Eur J Pharmacol. pii: S0014-2999(14)00463-4. PubMed

Clayton, AM., Dong, Y. and Dimopoulos, G., 2014, “The Anopheles innate immune system in the defense against malaria infection,” J Innate Immun. 6(2):169-81. PMCID: PMC3939431 PubMed

Baile, MG., Lu, YW. and Claypool, SM., 2014, “The topology and regulation of cardiolipin biosynthesis and remodeling in yeast,” Chem Phys Lipids, 179:25-31. PMCID: PMC3947685   PubMed

Wang, Y., Wang, JT., Rasoloson, D., Stitzel, ML., O’Connell, KF., Smith, HE. and Seydoux, G., 2014, “Identification of Suppressors of mbk-2/DYRK by Whole-Genome Sequencing,” G3 (Bethesda), 4(2):231-41.  PMCID: PMC3931558  PubMed

Hétié, P., de Cuevas, M. and Matunis, E., 2014, “Conversion of quiescent niche cells to somatic stem cells causes ectopic niche formation in the Drosophila testis,” Cell Rep. 7(3):715-21. PMCID: PMC4080611​ PubMed ​

Shamir, ER. and Ewald, AJ., 2014, “Three-dimensional organotypic culture: experimental models of mammalian biology and disease,” Nat Rev Mol Cell Biol. 15(10):647-64. PMCID: PMC4352326 PubMed

Rodriguez, S., Ellis, JM. and Wolfgang, MJ., 2014, “Chemical-genetic induction of Malonyl-CoA decarboxylase in skeletal muscle,” BMC Biochem. 15:20.  PMCID: PMC4236586 ​PubMed​

Herb, BR., 2014, “Epigenetics as an answer to Darwin’s “special difficulty”,” Front Genet. 5:321. PMCID: PMC4162389 PubMed

Chen, BC., Legant, WR., Wang, K., Shao, L., Milkie, DE., Davidson, MW., Janetopoulos, C., Wu, XS., Hammer, JA. 3rd, Liu, Z., English, BP., Mimori-Kiyosue, Y., Romero, DP., Ritter, AT., Lippincott-Schwartz, J., Fritz-Laylin, L., Mullins, RD., Mitchell, DM., Bembenek, JN., Reymann, AC., Böhme, R., Grill, SW., Wang, JT., Seydoux, G., Tulu, US., Kiehart, DP. and Betzig, E., 2014, “Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution,” Science. 346(6208):1257998. PMCID: PMC4336192 PubMed​

Hua, ZL., Jeon, S., Caterina, MJ. and Nathans, J., 2014, “Frizzled3 is required for the development of multiple axon tracts in the mouse central nervous system,” Proc Natl Acad Sci U S A. 111(29):E3005-14.  PMCID: PMC4115534​ PubMed

Ren, Y., West-Foyle, H., Surcel, A., Miller, C. and Robinson, DN., 2014, “Genetic suppression of a phosphomimic myosin II identifies system-level factors that promote myosin II cleavage furrow accumulation,” Mol Biol Cell. 25(25):4150-65.  PMCID: PMC4263456  PubMed

Salgado, M., Gandhi, S., Buckheit, RW., Berkenblit, GV. and Blankson, JN., 2014, “Evolution of an attenuated HIV-1 isolate in an elite suppressor,” AIDS Res Hum Retroviruses. 30(3):284-8. Epub 2013 Nov 13. PubMed

Cox, PM. and Bumpus, NN., 2014, “Structure-Activity Studies Reveal the Oxazinone Ring Is a Determinant of Cytochrome P450 2B6 Activity Toward Efavirenz,” ACS Med Chem Lett. 5(10):1156-1161. PMCID: PMC4191608 PubMed​

Levine, MS. and Holland, AJ., 2014, “Polo-like kinase 4 shapes up,” Structure, 22(8):1071-3.  PubMed

Kalia, J., Milescu, M., Salvatierra, J., Wagner, J., Klint, JK., King, GF., Olivera, BM. and Bosmans, F., 2014, “From Foe to Friend: Using Animal Toxins to Investigate Ion Channel Function,” J Mol Biol. 427(1):158-75, Review. PMCID: PMC4277912 PubMed

Salvatierra, J., Lee, DA., Zibetti, C., Duran-Moreno, M., Yoo, S., Newman, EA., Wang, H., Bedont, JL., de Melo, J., Miranda-Angulo, AL., Gil-Perotin, S., Garcia-Verdugo, JM. and Blackshaw, S., 2014, “The LIM Homeodomain Factor Lhx2 Is Required for Hypothalamic Tanycyte Specification and Differentiation,” J Neurosci. 34(50):16809-20. PMCID: PMC4261103 PubMed​

Bende, NS., Dziemborowicz, S., Mobli, M., Herzig, V., Gilchrist, J., Wagner, J., Nicholson, GM., King, GF. and Bosmans, F., 2014, “A distinct sodium channel voltage-sensor locus determines insect selectivity of the spider toxin Dc1a,” Nat Commun. 5:4350. PMCID: PMC4115291 PubMed

Stine, RR., Greenspan, LJ., Ramachandran, KV. and Matunis, EL., 2014, “Coordinate Regulation of Stem Cell Competition by Slit-Robo and JAK-STAT Signaling in the Drosophila Testis,” PLoS Genet. 10(11):e1004713. PMCID: PMC4222695  PubMed

Cleveland, TE 4th., McCabe, JM. and Leahy, DJ., 2014, “Detergent-solubilized Patched purified from Sf9 cells fails to interact strongly with cognate Hedgehog or Ihog homologs,” Protein Expr Purif, 104C, 92-102. PMCID: PMC4380871 PubMed

McCabe, JM. and Leahy, DJ., 2014, “Smoothened Goes Molecular: New Pieces in the Hedgehog Signaling Puzzle.” J Biol Chem, 6: 3500-7 PMCID: PMC4319017 PubMed​

Kelkar, DS., Provost, E., Chaerkady, R., Muthusamy, B., Manda, SS., Subbannayya, T., Selvan, LD., Wang, CH., Datta, KK., Woo, S., Dwivedi, SB., Renuse, S., Getnet, D., Huang, TC., Kim, MS.,, Pinto, SM., Mitchell, CJ., Madugundu, AK., Kumar, P., Sharma, J., Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Keshava Prasad, TS., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, SD. and Pandey, A., 2014, “Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis,” Mol Cell Proteomics. 13(11):3184-98. PMCID: PMC4223501 PubMed

Qing, Y., Yin, F., Wang, W., Zheng, Y., Guo, P., Schozer, F., Deng, H., and Pan, D., 2014, “The Hippo effector Yorkie activates transcription by interacting with a histone methyltransferase complex through Ncoa6,” Elife, 3.  PMCID: PMC4118621   PubMed

Mehta, S., Aye-Han, NN., Ganesan, A., Oldach, L., Gorshkov, K. and Zhang, J., 2014, “Calmodulin-controlled spatial decoding of oscillatory Ca2+ signals by calcineurin,” Elife. 3:e03765. PMCID: PMC4141273 PubMed

Berk, JM., Simon, DN., Jenkins-Houk, CR., Westerbeck, JW., Grønning-Wang, LM., Carlson, CR. and Wilson, KL., 2014, “The molecular basis of emerin-emerin and emerin-BAF interactions,” J Cell Sci. 127(Pt 18):3956-69. PMCID: PMC4163644 PubMed

Zhou, Y. and Nathans, J., 2014, “Gpr124 controls CNS angiogenesis and blood-brain barrier integrity by promoting ligand-specific canonical wnt signaling,” Dev Cell. 31(2):248-56. PMCID: PMC4223636  PubMed

Rattner, A., Wang, Y., Zhou, Y., Williams, J. and Nathans, JH., 2014, “The role of the hypoxia response in shaping retinal vascular development in the absence of Norrin/Frizzled4 signaling,” Invest Ophthalmol Vis Sci. 55(12):8614-25. PMCID: PMC4280883  PubMed

Heydarian, M., Luperchio, TR., Cutler, J., Mitchell, CJ., Kim, M., Pandey, A., Sollner-Webb, B. and Reddy, K., 2014, “Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis,” J Proteomics Bioinform. 7. pii: 1000302. PMCID: PMC4276347 PubMed

Tu-Sekine, B., Goldschmidt, H. and Raben, DM., 2014, “Diacylglycerol, phosphatidic acid, and their metabolic enzymes in synaptic vesicle recycling,” Adv Biol Regul, 57:147-52. PubMed

Lu, C., Ward, A., Bettridge, J., Liu, Y. and Desiderio, S., 2014, “An Autoregulatory Mechanism Imposes Allosteric Control on the V(D)J Recombinase by Histone H3 Methylation,” Cell Rep.10(1):29-38 PMCID: PMC4308961 PubMed

Freed, D., Stevens, EL. and Pevsner, J., 2014, “Somatic mosaicism in the human genome,” Genes (Basel). 5(4):1064-94. Review. PMCID: PMC4276927 PubMed

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Suarez, A., Ueno, T., Huebner, R., McCaffery, JM. and Inoue, T., 2014, “Bin/Amphiphysin/Rvs (BAR) family members bend membranes in cells,” Sci Rep. 4:4693.   PubMed

Cross, BM., Breitwieser, GE., Reinhardt, TA. and Rao, R., 2014, “Cellular calcium dynamics in lactation and breast cancer: from physiology to pathology,” Am J Physiol Cell Physiol. 306(6):C515-26. PMCID: PMC3948975 PubMed​

Wong, X., Luperchio, TR. and Reddy, KL., 2014, “NET gains and losses: the role of changing nuclear envelope proteomes in genome regulation,” Curr Opin Cell Biol. 28C:105-120.  Review.​ PubMed

Colis, L., Peltonen, K., Sirajuddin, P., Liu, H., Sanders, S., Ernst, G., Barrow, JC. and Laiho, M., 2014, “DNA intercalator BMH-21 inhibits RNA polymerase I independent of DNA damage response,” Oncotarget, 5(12):4361-4369. PMCID: PMC4147329 PubMed

Davis, CH., Kim, KY., Bushong, EA., Mills, EA., Boassa, D., Shih, T., Kinebuchi, M., Phan, S., Zhou, Y., Bihlmeyer, NA., Nguyen, JV., Jin, Y., Ellisman, MH. and Marsh-Armstrong, N., 2014, “Transcellular degradation of axonal mitochondria,” Proc Natl Acad Sci U S A. 111(26):9633-8.  PMCID: PMC4084443 PubMed

Guzzo, CM., Ringel, A., Cox, E., Uzoma, I., Zhu, H., Blackshaw, S., Wolberger, C. and Matunis, MJ., 2014, “Characterization of the SUMO-Binding Activity of the Myeloproliferative and Mental Retardation (MYM)-Type Zinc Fingers in ZNF261 and ZNF198,” PLoS One. 9(8):e105271. PMCID: PMC4136804​ PubMed

Kuang, Z., Cai, L., Zhang, X., Ji, H., Tu, BP. and Boeke, JD., 2014, “High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast,” Nat Struct Mol Biol. 21(10):854-63  PMCID: PMC4190017 ​ PubMed

Cieniewicz, AM., Moreland, L., Ringel, AE., Mackintosh, SG., Raman, A., Gilbert, TM., Wolberger, C., Tackett, AJ. and Taverna, SD., 2014, “The bromodomain of Gcn5 regulates site-specificity of lysine acetylation on histone H3,” Mol Cell Proteomics,13(11):2896-910.  PMCID: PMC4223480 PubMed

Gilbert, TM., McDaniel, SL., Byrum, SD., Cades, JA., Dancy, BC., Wade, H., Tackett, AJ., Strahl, BD. and Taverna, SD., 2014, “An H3K36me3 binding PWWP protein targets the NuA3 acetyltransferase complex to coordinate transcriptional elongation at coding regions,” Mol Cell Proteomics, 13(11):2883-95. PMCID: PMC4223479​ PubMed

Li, Y., Ma, Q., Cherry, CM. and Matunis, EL., 2014, “Steroid signaling promotes stem cell maintenance in the Drosophila testis,” Dev Biol. 394(1):129-41.  PMCID: PMC4165524​ PubMed

Kim, YS., Chu, Y., Han, L., Li, M., Li, Z., Lavinka, PC., Sun, S., Tang, Z., Park, K., Caterina, MJ., Ren, K., Dubner, R., Wei, F. and Dong, X., 2014, “Central Terminal Sensitization of TRPV1 by Descending Serotonergic Facilitation Modulates Chronic Pain,” Neuron, 81(4):873-87.  PMCID: PMC3943838 PubMed

Debeljak, M., Freed, DN., Welch, JA., Haley, L., Beierl, K., Iglehart, BS., Pallavajjala, A., Gocke, CD., Leffell, MS., Lin, MT., Pevsner, J., Wheelan, SJ and Eshleman, JR., 2014, “Haplotype counting by next-generation sequencing for ultrasensitive human DNA detection,” J Mol Diagn. 16(5):495-503.      PubMed 

Colis, L., Ernst, G., Sanders, S., Liu, H., Sirajuddin, P., Peltonen, K., DePasquale, M., Barrow, JC. and Laiho, M., 2014, “Design, synthesis, and structure-activity relationships of pyridoquinazolinecarboxamides as RNA polymerase I inhibitors,” J Med Chem 57(11):4950-61.​ PMCID: PMC4059246​ PubMed 

Prendergast, J., Umanah, GK., Yoo, SW., Lagerlöf, O., Motari, MG., Cole, RN., Huganir, RL., Dawson, TM., Dawson, VL. and Schnaar, RL., 2014, “Ganglioside regulation of AMPA receptor trafficking,” J Neurosci. 34(39):13246-58. PMCID: PMC4172811  PubMed

Paix, A., Wang, Y., Smith, H., Lee, CY., Calidas, D., Lu, T., Smith, J., Schmidt, H., Krause, M. and Seydoux, G., 2014, “Scalable and Versatile Genome Editing Using Linear DNAs with Micro-homology to Cas9 Sites in Caenorhabditis elegans,” Genetics, 198(4):1347-56.  PMCID: PMC4256755 PubMed

Li, Z., He, SQ., Xu, Q., Yang, F., Tiwari, V., Liu, Q., Tang, Z., Han, L., Chu, YX., Wang, Y., Hin, N., Tsukamoto, T., Slusher, B., Guan, X., Wei, F., Raja, SN., Dong, X. and Guan, Y., 2014, “Activation of MrgC receptor inhibits N-type calcium channels in small-diameter primary sensory neurons in mice,” Pain, 155(8):1613-21. PMCID: PMC4104261  PubMed

Gilbert, CE., Zuckerman, DM., Currier, PL. and Machamer, CE., 2014, “Three basic residues of intracellular loop 3 of the Beta-1 adrenergic receptor are required for golgin-160-dependent trafficking,” Int J Mol Sci. 15(2):2929-45. PMCID: PMC3958891 PubMed

Brubaker, SW., Gauthier, AE., Mills, EW., Ingolia, NT. and Kagan, JC.,  2014, “A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity,” Cell. 2014 Feb 13;156(4):800-11. doi: 10.1016/j.cell.2014.01.021. PMCID: PMC3959641 PubMed

Meier, EL. and Goley, ED., 2014, “Form and function of the bacterial cytokinetic ring,” Curr Opin Cell Biol. 26C:19-27.  PubMed

Oldach, L. and Zhang, J., 2014, “Genetically Encoded Fluorescent Biosensors for Live-Cell Visualization of Protein Phosphorylation,” Chem Biol. 21(2):186-197. PMCID: PMC4050661  PubMed

Luperchio, TR., Wong, X. and Reddy, KL., 2014, “Genome regulation at the peripheral zone: lamina associated domains in development and disease,” Curr Opin Genet Dev. 25C:50-61.  Review. PubMed

Huebner, RJ. and Ewald, AJ., 2014, “Cellular foundations of mammary tubulogenesis,” Semin Cell Dev Biol, 31:124-31. Review.​ PMCID: PMC4116098 PubMed

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Hodge, DL., Berthet, C., Coppola, V., Kastenmüller, W., Buschman, MD., Schaughency, PM., Shirota, H., Scarzello, AJ., Subleski, JJ., Anver, MR., Ortaldo, JR., Lin, F., Reynolds, DA., Sanford, ME., Kaldis, P., Tessarollo, L., Klinman, DM. and Young, HA., 2014, “IFN-gamma AU-rich element removal promotes chronic IFN-gamma expression and autoimmunity in mice,” J Autoimmun. 53:33-45. PMCID: PMC4148478 PubMed

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Sluch, VM. and Zack, DJ. 2014, “Stem cells, retinal ganglion cells and glaucoma,” Dev Ophthalmol. 53:111-21. PMCID: PMC4547935  PubMed

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Eyler, DE., Wehner, KA. and Green, R., 2013, “Eukaryotic release factor 3 is required for multiple turnovers of peptide release catalysis by eukaryotic release factor 1,” J Biol Chem., 288(41):29530-8. PMCID: PMC3795251  PubMed

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West-Foyle, H. and Robinson, DN., 2012, “Cytokinesis mechanics and mechanosensing,” Cytoskeleton, 69(10):700-709. PMCID: PMC3477504 Pubmed 

Herb, BR., Wolschin, F., Hansen, KD., Aryee, MJ., Langmead, B., Irizarry, R., Amdam, GV., and Feinberg, AP., 2012, “Reversible switching between epigenetic states in honeybee behavioral subcastes,” Nat Neurosci. 15(10):1371-3. PMCID: PMC3518384Pubmed 

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Jilek, BL., Zarr, M., Sampah, ME., Rabi, SA., Bullen, CK., Lai, J., Shen, L. and Siliciano, RF., 2012, “A quantitative basis for antiretroviral therapy for HIV-1 infection,” Nat Med. 18(3):446-51. PMCID: PMC3296892 Pubmed

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Rotty, JD. and Coulombe PA., 2012, “A wound-induced keratin inhibits Src activity during keratinocyte migration and tissue repair,” J Cell Biol,197(3):381-9. PMCID: PMC3341159  Pubmed

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Stevens, EL., Heckenberg, G., Baugher, JD., Roberson, ED., Downey, TJ. and Pevsner, J., 2012, “Consanguinity in Centre d’Étude du Polymorphisme Humain (CEPH) pedigrees,” Eur J Hum Genet. 20(6):657-67. PMCID: PMC3355261 Pubmed  

Alammar Zaritsky, L., Gama, L. and Clements, JE., 2012, “Canonical type I IFN signaling in simian immunodeficiency virus-infected macrophages is disrupted by astrocyte-secreted CCL2,” J Immunol. 188(8):3876-85. PMCID: PMC3343693 Pubmed 

Shoemaker, CJ. and Green, R., 2012, “Translation drives mRNA quality control,” Nat Struct Mol Biol. 19(6):594-601. PMCID: PMC4299859 Pubmed 

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Simon, DN., Domaradzki, T., Hofmann, WA. and Wilson, KL., 2013, “Lamin A tail modification by SUMO1 is disrupted by familial partial lipodystrophy-causing mutations,” Mol Biol Cell., 24(3):342-50. PMCID: PMC3564541  Pubmed 

Huster, D., Kühne, A., Bhattacharjee, A., Raines, L., Jantsch, V., Noe, J., Schirrmeister, W., Sommerer, I., Sabri, O., Berr, F., Mössner, J., Stieger, B., Caca, K. and Lutsenko, S., 2012, “Diverse functional properties of Wilson disease ATP7B variants,” Gastroenterology. 142(4), 947-956. PMCID: PMC3461965 Pubmed 

Currier, DG., Polk, RC. and Reeves, RH., 2012, “A Sonic hedgehog (Shh) response deficit in trisomic cells may be a common denominator for multiple features of Down syndrome,” Prog Brain Res. 197:223-36. PMCID: PMC4405118 Pubmed 

Rodriguez, S. and Wolfgang, MJ., 2012, “Targeted chemical-genetic regulation of protein stability in vivo,” Chem Biol. 19(3):391-8. PMCID: PMC3314227 Pubmed 

DeRose, R., Pohlmeyer, C., Umeda, N., Ueno, T., Nagano, T., Kuo, S. and Inoue, T., 2012, “Spatio-temporal manipulation of small GTPase activity at subcellular level and on timescale of seconds in living cells,” J Vis Exp. (61). pii: 3794. PMCID: PMC3460574 Pubmed 

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Miyamoto, T., DeRose, R., Suarez, A., Ueno, T., Chen, M., Sun, TP., Wolfgang, MJ., Mukherjee, C., Meyers, DJ. and Inoue, T., 2012, “Rapid and orthogonal logic gating with a gibberellin-induced dimerization system,” Nat Chem Biol. 8(5):465-70. PMCID: PMC3368803 Pubmed 

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Schaughency, P., Merran, J. and Corden, JL., 2010, “Genome-Wide Mapping of Yeast RNA Polymerase II Termination,” PLoS Genet. 10(10):e1004632.  PMCID: PMC4191890  PubMed

Nguyen-Ngoc, KV., Cheung, KJ., Brenot, A., Shamir, ER., Gray, RS., Hines, WC., Yaswen, P., Werb, Z. and Ewald, AJ., 2012, “ECM microenvironment regulates collective migration and local dissemination in normal and malignant mammary epithelium,” Proc Natl Acad Sci U S A. 109(39):E2595-604. Epub 2012 Aug 23, PMCID: PMC3465416 PubMed

Wang, JT. and Seydoux, G., 2013, “Germ cell specification,” Adv Exp Med Biol. 757:17-39. Review, PMCID: unknown  Pubmed​

Chan, W., Schaffer, TB. and Pomerantz, JL., 2013, “A quantitative signaling screen identifies CARD11 mutations in the CARD and LATCH domains that induce Bcl10 ubiquitination and human lymphoma cell survival,” Mol Cell Biol. 33(2):429-43. PMCID: PMC3554118 Pubmed

Shilagardi, K., Li, S., Luo, F., Marikar, F., Duan, R., Jin, P., Kim, JH., Murnen, K. and Chen, EH., 2013, “Actin-propelled invasive membrane protrusions promote fusogenic protein engagement during cell-cell fusion,” Science. PMCID: PMC3631436 PubMed

Huang, Q., Purzycka, KJ., Lusvarghi, S., Li, D., Legrice, SF. and Boeke, JD., 2013,  “Retrotransposon Ty1 RNA contains a 5′-terminal long-range pseudoknot required for efficient reverse transcription,” RNA. 19(3):320-32. PMCID: PMC3677243 PubMed

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Stine, RR. and Matunis, EL., 2013,  ‘JAK-STAT signaling in stem cells, ‘ Adv Exp Med Biol. 786:247-67. PMID: 23696361 PubMed

Baile, MG., Whited, K. and Claypool, SM., 2013, “Deacylation on the matrix side of the mitochondrial inner membrane regulates cardiolipin remodeling,” Mol Biol Cell. ;24(12):2008-20. PMCID: PMC3681703  PubMed

Zhao, X., Tang, Z., Zhang, H., Atianjoh, FE., Zhao, JY., Liang, L., Wang, W., Guan, X., Kao, SC., Tiwari, V., Gao, YJ., Hoffman, PN., Cui, H., Li, M., Dong, X. and Tao, YX., 2013, “A long noncoding RNA contributes to neuropathic pain by silencing Kcna2 in primary afferent neurons,” Nat Neurosci. 16(8):1024-31 PMCID:  PMC3742386 PubMed

Baugher, JD., Baugher, BD., Shirley, MD and Pevsner, J., 2013, “Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method,” BMC Genomics. 14:367. PMCID: PMC3680018 PubMed