Image of Tamara Lopez-Vidal

Tamara Lopez-Vidal


Jackie Zimmerman Lab


Publications

  • Bergman DR, Johnson JAI, Naji M, Booth M, Lima da Rocha H, Deshpande A, Sidiropoulos DN, Lopez-Vidal T, Heiland R, Kagohara LT, Anders RA, Zheng L, Jaffee EM, Stein-O'Brien G, Macklin P, Fertig EJ., 2025, BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells, Bioinformatics, 41(11):btaf571. doi: 10.1093/bioinformatics/btaf571. PMCID: PMC12597895  PubMed
  • Johnson JAI, Bergman DR, Rocha HL, Zhou DL, Cramer E, Mclean IC, Dance YW, Booth M, Nicholas Z, Lopez-Vidal T, Deshpande A, Heiland R, Bucher E, Shojaeian F, Dunworth M, Forjaz A, Getz M, Godet I, Kurtoglu F, Lyman M, Metzcar J, Mitchell JT, Raddatz A, Solorzano J, Sundus A, Wang Y, DeNardo DG, Ewald AJ, Gilkes DM, Kagohara LT, Kiemen AL, Thompson ED, Wirtz D, Wood LD, Wu PH, Zaidi N, Zheng L, Zimmerman JW, Phillip JM, Jaffee EM, Gray JW, Coussens LM, Chang YH, Heiser LM, Stein-O'Brien GL, Fertig EJ, Macklin P., 2025, Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories, Cell, S0092-8674(25)00750-0. doi: 10.1016/j.cell.2025.06.048. PMID: 40713951  PubMed
  • Palmer T, Kessler MD, Shao XM, Balan A, Yarchoan M, Zaidi N, Lopez-Vidal TY, Saeed AM, Gore J, Azad NS, Jaffee EM, Favorov AV, Anagnostou V, Karchin R, Gaykalova DA, Fertig EJ, Danilova L., 2024, SpliceMutr Enables Pan-Cancer Analysis of Splicing-Derived Neoantigen Burden in Tumors, Cancer Res Commun., 4(12):3137-3150. doi: 10.1158/2767-9764.CRC-23-0309. PMCID: PMC11648103  PubMed
  • Shu DH, Ho WJ, Kagohara LT, Girgis A, Shin SM, Danilova L, Lee JW, Sidiropoulos DN, Mitchell S, Munjal K, Howe K, Bendinelli KJ, Kartalia E, Qi H, Mo G, Montagne J, Leatherman JM, Lopez-Vidal TY, Zhu Q, Huff AL, Yuan X, Hernandez A, Coyne EM, Zaidi N, Zabransky DJ, Engle LL, Ogurtsova A, Baretti M, Laheru D, Durham JN, Wang H, Sunshine JC, Johnston RJ, Deutsch JS, Taube JM, Anders RA, Jaffee EM, Fertig EJ, Yarchoan M., 2024, Immunotherapy response induces divergent tertiary lymphoid structure morphologies in hepatocellular carcinoma, Nat Immunol., 25(11):2110-2123. doi: 10.1038/s41590-024-01992-w. PMCID: PMC12042221  PubMed