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Sluch VM, Chamling X, Liu MM, Berlinicke CA, Cheng J, Mitchell KL, Welsbie DS, Zack DJ. 2017 Nov. “Enhanced Stem Cell Differentiation and Immunopurification of Genome Engineered Human Retinal Ganglion Cells.” Stem Cells Transl Med. 6(11):1972-1986. doi:10.1002/sctm.17-0059. Epub 2017 Oct 10. PMID: 29024560. PMCID: PMC6430043. PubMed.

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Lee, J., Choi, J., Selen Alpergin, ES., Zhao, L., Hartung, T., Scafidi, S., Riddle, RC., Wolfgang, MJ., 2017, “Loss of Hepatic Mitochondrial Long-Chain Fatty Acid Oxidation Confers Resistance to Diet-Induced Obesity and Glucose Intolerance,” Cell Rep. 20(3):655-667. PMCID: 25546239 PubMed

Welsbie, DS., Mitchell, KL., Jaskula-Ranga, V., Sluch, VM., Yang, Z., Kim, J., Buehler, E., Patel, A., Martin, SE., Zhang, PW., Ge, Y., Duan, Y., Fuller, J., Kim, BJ., Hamed, E., Chamling, X., Lei, L., Fraser, IDC., Ronai, ZA., Berlinicke, CA. and Zack, DJ., 2017, “Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons,” Neuron. 94(6):1142-1154.e6O PMCID: PMC5553555 PubMed

El-Diwany, R., Breitwieser, FP., Soliman, M., Skaist, AM., Srikrishna, G., Blankson, JN., Ray, SC., Wheelan, SJ., Thomas, DL., and Balagopal, A., 2017, “Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals,”  AIDS. PMCID: PMC5572749 PubMed

Cox, E., Hwang, W., Uzoma, I., Hu, J., Guzzo, C., Jeong, J., Matunis, M., Qian, J., Zhu, H., and Blackshaw, S., 2017, “Global analysis of SUMO-binding proteins identifies SUMOylation as a key regulator of the INO80 chromatin remodeling complex,” Mol Cell Proteomics. pii: mcp.M116.063719. PMCID: PMC5417823 PubMed

Lu, YW., Acoba, MG., Selvaraju, K., Huang, TC., Nirujogi, RS., Sathe, G., Pandey, A.,and Claypool, SM., 2017, “Human adenine nucleotide translocases physically and functionally interact with respirasomes,” Mol Biol Cell. pii: mbc.E17-03-0195. PMCID: PMC5449148 PubMed

Goodrich, AC., Meyers, DJ. and Frueh, DP., 2-17, “Molecular Impact of Covalent Modifications on Nonribosomal Peptide Synthetase Carrier Protein Communication,” J Biol Chem. 2017 Apr 28. pii: jbc.M116.766220.PMCID: PMC5473208 PubMed

Cairns, L., Tran, T. and Kavran, JM., 2017, “Structural Insights into the Regulation of Hippo Signaling,” ACS Chem Biol. PubMed

Bettridge, J., Na, CH., Pandey, A. and Desiderio, S., 2017, “H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase,” Proc Natl Acad Sci U S A. 114(8):1904-1909. PMCID: PMC5338453 PubMed

Burr, R., Stewart, EV. and Espenshade, PJ., 2017, “Coordinate Regulation of Yeast Sterol Regulatory Element-Binding Protein (SREBP) and Mga2 Transcription Factors," J Biol Chem. 2017 Feb 15. pii: jbc.M117.778209. PMCID: PMC5392677 PubMed

Mills, EW., Green, R. and Ingolia, NT., 2017, “Slowed decay of mRNAs enhances platelet specific translation,” Blood. pii: blood-2016-08-736108. PMCID: PMC5409447 PubMed

Gonzalez-Hurtado, E., Lee, J., Choi, J., Selen Alpergin, ES., Collins, SL., Horton, MR. and Wolfgang, MJ., 2017, “The Loss Of Macrophage Fatty Acid Oxidation Does Not Potentiate Systemic Metabolic Dysfunction," Am J Physiol Endocrinol Metab :ajpendo.00408.2016. PMCID: PMC5451524 PubMed

El-Diwany, R., Cohen, VJ., Mankowski, MC., Wasilewski, LN., Brady, JK., Snider, AE., Osburn, WO., Murrell, B., Ray, SC., Bailey, JR., 2017, “Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1,” PLoS Pathog. 13(2):e1006235. PMCID: PMC5342271 PubMed

Li, Z., Tseng, PY., Tiwari, V., Xu, Q., He, SQ., Wang, Y., Zheng, Q., Han, L., Wu, Z., Blobaum, AL., Cui, Y., Tiwari, V., Sun, S., Cheng, Y., Huang-Lionnet, JH., Geng, Y., Xiao, B., Peng, J., Hopkins, C., Raja, SN., Guan, Y. and Dong, X., 2017, “Targeting human Mas-related G protein-coupled receptor X1 to inhibit persistent pain,” Proc Natl Acad Sci U S A. pii: 201615255. PMCID: PMC5347560 PubMed

Bachas, S., Kohrs, B. and Wade, HV.,2017, "Unconventional coupling between ligand recognition and allosteric control in the multidrug resistance gene regulator, BmrR," ChemMedChem. PubMed​

Prasad, TS., Mohanty, AK., Kumar, M., Sreenivasamurthy, SK., Dey, G., Nirujogi, RS., Pinto, SM., Madugundu, AK., Patil, AH., Advani, J., Manda, SS., Gupta, MK., Dwivedi, SB., Kelkar, DS., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, SD., Solanki, HS., Raja, R., Sathe, GJ., Chavan, S., Verma, R., Patel, KM., Jain, AP., Syed, N., Datta, KK., Khan, AA., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, CJ., Na, CH., Kumar, N., Sinnis, P., Sharakhov, IV., Wang, C., Gowda, H., Tu, Z., Kumar, A. and Pandey, A., 2016, “Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes,” Genome Res. 27(1):133-144. PMCID: PMC5204337 PubMed

Jouanneau, M., McClary, B., Reyes, J.C.P., Chen, R., Chen, Y., Plunkett, W., Cheng, X., Milinichik, A.Z., Albone, E.F., Liu, J.O., Romo, D. (2016). Derivatization of agelastatin A leading to bioactive analogs and a trifunctional probe. Bioorg. Med. Chem. Lett. 26(8):2092-7 PMCID: PMC5522753 PubMed

Cox, PM. and Bumpus, NN., 2016, “Single Heteroatom Substitutions in the Efavirenz Oxazinone Ring Impact Metabolism by CYP2B6,” ChemMedChem. PMID: 27860311. PubMed​

Tan, SY., Little, HC., Lei, X., Li, S., Rodriguez, S. and Wong, GW., 2016, “Partial deficiency of CTRP12 alters hepatic lipid metabolism,” Physiol Genomics. :physiolgenomics.00111.2016.​ PubMed

Chen, Z., Dempsey, DR., Thomas, SN., Hayward, D., Bolduc, DM. and Cole, PA., 2016, “Molecular Features of Phosphatase and Tensin Homolog (PTEN) Regulation by C-terminal Phosphorylation,” J Biol Chem. (27):14160-9. PMCID: PMC4933174 PubMed

Shen, Y., Stracquadanio, G., Wang, Y., Yang, K., Mitchell, LA., Xue, Y., Cai, Y., Chen, T., Dymond, JS., Kang, K., Gong, J., Zeng, X., Zhang, Y., Li, Y., Feng, Q., Xu, X., Wang, J., Wang, J., Yang, H., Boeke, JD. and Bader, JS., 2016, “SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes,” Genome Res. 26(1):36-49. PMID: 26566658 ​PubMed

Nomura, M., Liu, J., Rovira, II., Gonzalez-Hurtado, E., Lee, J., Wolfgang, MJ., Finkel, T., 2016, "Fatty acid oxidation in macrophage polarization," Nat Immunol.17(3):216-7. PMID: 26882249 PubMed

Ellison, D., Mugler, A., Brennan, MD., Lee, SH., Huebner, RJ., Shamir, ER., Woo, LA., Kim, J., Amar, P., Nemenman, I., Ewald, AJ. and Levchenko, A., 2016, "Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis," Proc Natl Acad Sci U S A. 113(6):E679-88. PMID: 26792522 PubMed​

Tu-Sekine, B., Goldschmidt, HL. and Raben, DM., 2016, "DGK-θ: Structure, Enzymology, and Physiological Roles," Front Cell Dev Biol. 4:101. PMCID:PMC5021689. PubMed

Pohlmeyer, CW., Walker-Sperling, VE., Blankson, JN., 2016, "What can we do to reduce the viral reservoir in HIV-1-infected individuals?,"Future Microbiol. 11:839-42. PMID: 27416850. PubMed

Hanlon, CD. and Andrew, DJ., 2016, "Drosophila FoxL1 non-autonomously coordinates organ placement during embryonic development," Dev Biol. 419(2):273-284. PMCID: PMC5237845. PubMed

Rodriguez, S., Lei, X., Petersen, PS., Tan, SY., Little, HC., Wong, GW., 2016, "Loss of CTRP1 disrupts glucose and lipid homeostasis," Am J Physiol Endocrinol Metab. 23:ajpendo.00087.2016. PMID: 27555298 PubMed

Huebner, RJ., Neumann, NM., Ewald, AJ., 2016, "Mammary epithelial tubes elongate through MAPK-dependent coordination of cell migration," Development. 143(6):983-93. PMID: 26839364 PubMed

Ma, Q., de Cuevas, M., Matunis, EL., "Chinmo is sufficient to induce male fate in somatic cells of the adult Drosophila ovary," Development. 143(5):754-63. PMID: 26811385  PubMed

Moreno, A., Froehlig, JR., Bachas, S., Gunio, D., Alexander, T., Vanya, A. and Wade, H., 2016, "Solution Binding and Structural Analyses Reveal Potential Multidrug Resistance Functions for SAV2435 and CTR107 and Other GyrI-like Proteins," Biochemistry. 55(34):4850-63. 18. PMID: 27505298 PubMed

Laskey, SB., Pohlmeyer, CW., Bruner, KM. and Siliciano, RF., 2016, "Evaluating Clonal Expansion of HIV-Infected Cells: Optimization of PCR Strategies to Predict Clonality,"  PLoS Pathog. 12(8):e1005689. PMCID:PMC4975415 PubMed

Oh, Y., Cho, GS., Li, Z., Hong, I., Zhu, R., Kim, MJ., Kim, YJ., Tampakakis, E., Tung, L., Huganir, R., Dong, X., Kwon, C. and Lee, G., 2016, "Functional Coupling with Cardiac Muscle Promotes Maturation of hPSC-Derived Sympathetic Neurons," Cell Stem Cell. PMID: 27320040 PubMed

Lee, J., Choi, J., Scafidi, S. and Wolfgang, MJ., 2016, "Hepatic Fatty Acid Oxidation Restrains Systemic Catabolism during Starvation," Cell Rep. 16(1):201-12. PMID: 27320917  PubMed

Cho, S., Dickey, SW., and Urban, S., 2016, "Crystal Structures and Inhibition Kinetics Reveal a Two-Stage Catalytic Mechanism with Drug Design Implications for Rhomboid Proteolysis," Mol Cell. pii: S1097-2765(15)00978-8. PubMed

Campbell, DP., Chrysostomou, E. and Doetzlhofer, A., 2016, "Canonical Notch signaling plays an instructive role in auditory supporting cell development," Sci Rep. 6:19484. PMCID: PMC472625 PubMed

Ellison, D., Mugler, A., Brennan, MD., Lee, SH., Huebner, RJ., Shamir, ER., Woo, LA., Kim, J., Amar, P., Nemenman, I., Ewald, AJ. and Levchenko, A., 2016, "Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis," Proc Natl Acad Sci U S A. pii: 201516503. PubMed

Goldschmidt, HL., Tu-Sekine, B., Volk, L., Anggono, V., Huganir, RL. and Raben, DM., 2016,  "DGKθ Catalytic Activity Is Required for Efficient Recycling of Presynaptic Vesicles at Excitatory Synapses," Cell Rep. 14(2):200-7. PubMed

Mirsafian, H., Manda, SS., Mitchell, CJ., Sreenivasamurthy, S., Ripen, AM., Mohamad, SB., Merican, AF., and Pandey, A., 2016,  "Long non-coding RNA expression in human primary monocytes," Genomics. pii: S0888-7543(16)30002-7. PubMed

Wasilewski, LN., El-Diwany, R., Munshaw, S., Snider, AE., Brady, JK., Osburn, WO., Ray, SC., and Bailey, JR., 2016, "A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies," J Virol. pii: JVI.02837-15. PubMed

Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS. and Pomerantz, JL., 2015, "Negative Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. pii: MCB.00876-15.  PubMed

Pedersen, SM., Chan, W., Jattani, RP., Mackie, DS., and Pomerantz, JL., 2016,  "Correction for Pedersen et al., Regulation of CARD11 Signaling and Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181," Mol Cell Biol. 36(8):1322.​​ PubMed

Jattani, RP., Tritapoe, JM., and Pomerantz, JL., 2016, "Intramolecular Interactions and Regulation of Cofactor Binding by the Four Repressive Elements in the Caspase Recruitment Domain-Containing Protein 11 (CARD11) Inhibitory Domain," J Biol Chem. pii: jbc.M116.717322.​​PubMed

Lee, J., Choi, J., Aja, S., Scafidi, S., and Wolfgang, MJ., 2016, "Loss of Adipose Fatty Acid Oxidation Does Not Potentiate Obesity at Thermoneutrality," Cell Rep. 14(6):1308-16.​ PMCID: PMC4758873 PubMed

Bachas, S., Kohr, B., and Wade, H., 2016, "Charge is Major Determinant of Activation of the Ligand-Responsive Multidrug Resistance Gene Regulator," BmrR. C​hemMedChem. ​ PubMed

Shirley, MD., Frelin, L., López, JS., Jedlicka, A., Dziedzic, A., Frank-Crawford, MA., Silverman, W., Hagopian, L., and Pevsner, J., 2016, "Copy Number Variants Associated with 14 Cases of Self-Injurious Behavior," PLoS One. 11(3):e0149646.​ ​ PubMed

Chamling, X., Sluch, VM., and Zack, DJ., 2016, "The Potential of Human Stem Cells for the Study and Treatment of Glaucoma," Invest Ophthalmol Vis Sci. 57(5):ORSFi1-6.​ PubMed

Mitchell, CJ., Kim, MS., Zhong, J., Nirujogi, RS., Bose, AK., and Pandey, A., 2016, "Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans," Mol Oncol.  pii: S1574-7891(16)30010-2.​ PubMed​

Lin, X., Steinberg, S., Kandasamy, SK., Afzal, J., Mbiyangandu, B., Liao, SE., Guan, Y., Corona-Villalobos, CP., Matkovich, SJ.,  Epstein, N., Tripodi, D., Huo, Z., Cutting, G., Abraham, TP., Fukunaga, R., and Abraham, MR., 2016, “Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis," PLoS One. 11(5):e0156065. eCollection 2016.​  PubMed

Pokorná, L., Čermáková, P., Horváth, A., Baile, MG., Claypool, SM., Griač, P., Malínský, J. and Balážová, M., 2016, "Specific degradation of phosphatidylglycerol is necessary for proper mitochondrial morphology and function," Biochim Biophys Acta. 1857(1):34-45. PMCID: PMC4690203  PubMed

Mitchell, CJ., Kim, MS., Na, CH., and Pandey, A., 2016, ” PyQuant: a versatile framework for analysis of quantitative mass spectrometry data,” Mol Cell Proteomics. pii: mcp.O115.056879  15(8):2829-38. PMCID: PMC4974355  PubMed​

Lee, J., Choi, J., Wong, GW., and Wolfgang, MJ., 2016, "Neurometabolic roles of ApoE and Ldl-R in mouse brain," J Bioenerg Biomembr. ​48(1):13-21. PMCID: PMC4733629  PubMed

Greenspan, LJ., de Cuevas, M. and Matunis, E., 2015, "Genetics of Gonadal Stem Cell Renewal," Annu Rev Cell Dev Biol,31:291-315  PMCID: PMC4659427 PubMed

Goodrich, AC. and Frueh, DP., 2015, "A Nuclear Magnetic Resonance Method for Probing Molecular Influences of Substrate Loading in Nonribosomal Peptide Synthetase Carrier Proteins. Biochemistry, 54, 1154-6.  PMCID: PMC4378656 PubMed

Lu, YW. and Claypool, SM., 2015, "Disorders of phospholipid metabolism: an emerging class of mitochondrial disease due to defects in nuclear genes," Front Genet. 2015 Feb 3;6:3 PMCID: PMC4315098

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Sluch, VM., Davis, CH., Ranganathan, V., Kerr, JM., Krick, K., Martin, R., Berlinicke, CA., Marsh-Armstrong, N., Diamond, JS., Mao, HQ. and Zack, DJ., 2015, “Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line,” Sci Rep. 5:16595. PMCID: PMC4643248 PubMed

Cheng, YL. and Andrew, DJ., 2015, "Extracellular Mipp1 Activity Confers Migratory Advantage to Epithelial Cells during Collective Migration," Cell Rep. 13(10):2174-88. PMCID: PMC4776642. PubMed

Goodrich, AC., Harden, BJ. and Frueh, DP., 2015, "Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts," J Am Chem Soc. PMID: 26334259​ PubMed

Ward, MD. and Leahy, DJ., 2015, "Kinase activator-receiver preference in ErbB heterodimers is determined by intracellular regions and is not coupled to extracellular asymmetry," J Biol Chem. 290(3):1570-9. PMCID: PMC4340403 PubMed

Deng, K., Pertea, M., Rongvaux, A., Wang, L., Durand, CM., Ghiaur, G., Lai, J., McHugh, HL., Hao, H., Zhang, H., Margolick, JB., Gurer, C., Murphy, AJ., Valenzuela, DM., Yancopoulos, GD., Deeks, SG., Strowig, T., Kumar, P., Siliciano, JD., Salzberg, SL., Flavell, RA., Shan, L. and Siliciano, RF, 2015, "Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations," Nature.15;517(7534):381-5. PMCID: PMC4406054  PubMed

Multhaup, ML., Seldin, MM., Jaffe, AE., Lei, X., Kirchner, H., Mondal, P., Li, Y., Rodriguez, V., Drong, A., Hussain, M., Lindgren, C., McCarthy, M., Näslund, E., Zierath, JR., Wong, GW. and Feinberg, AP., 2015, "Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes," Cell Metab. 21(1):138-49. PMCID: PMC4340475  PubMed

Dancy, BM. and Cole, PA., 2015, "Protein Lysine Acetylation by p300/CBP," Chem Rev, 115(6):2419-52. PMCID: PMC4378506 PubMed

Goodrich, AC. and Frueh, DP., 2015, "A Nuclear Magnetic Resonance Method for Probing Molecular Influences of Substrate Loading in Nonribosomal Peptide Synthetase Carrier Proteins. Biochemistry, 54, 1154-6.  PMCID: PMC4378656 PubMed

Harr, JC.*, Luperchio, TR.*, Wong, X.*, Cohen, E*., Wheelan, SJ. and Reddy, KL., 2015, "Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins," J Cell Biol. 208(1):33-52. PMCID: PMC4284222 *equal contribution.​ PubMed​

Surcel, A., Ng, WP., West-Foyle, H., Zhu, Q., Ren, Y., Avery, LB., Krenc, AK., Meyers, DJ., Rock, RS., Anders, RA., Freel, Meyers, CL. and Robinson, DN., 2015, "Pharmacological activation of myosin II paralogs to correct cell mechanics defects," Proc Natl Acad Sci USA, 112(5):1428-33.  PMCID: PMC4321244 PubMed​

Lu, YW. and Claypool, SM., 2015, "Disorders of phospholipid metabolism: an emerging class of mitochondrial disease due to defects in nuclear genes," Front Genet. 2015 Feb 3;6:3 PMCID: PMC4315098  PubMed​

Lei, X.*, Li, Q., Rodriguez, S.*, Tan, SY.*, Seldin, MM.*, McLenithan, JC., Jia, W. and Wong, GW., 2015, "Thromboxane synthase deficiency improves insulin action and attenuates adipose tissue fibrosis," Am J Physiol Endocrinol Metab. 308(9):E792-804 *equal contribution PubMed

Cox, E., Uzoma, I., Guzzo, C., Jeong, JS., Matunis, M., Blackshaw, S. and Zhu, H., 2015, "Identification of SUMO E3 Ligase-Specific Substrates Using the HuProt Human Proteome Microarray," Methods Mol Biol. 1295:455-63. PMCID: unknown PubMed

Eginton C, Cressman WJ, Bachas S, Wade H, Beckett D. Allosteric Coupling via Distant Disorder-to-Order Transitions. J Mol Biol. 2015 Apr 24;427(8):1695-1704. doi: 10.1016/j.jmb.2015.02.021. Epub 2015 Mar 4. PubMed

Deng, H., Wang, W., Yu, J., Zheng, Y., Qing, Y., and Pan, D., 2015, "Spectrin regulates Hippo signaling by modulating cortical actomyosin activity,"  ELife, 4:e06567.  PMCID: PMC4412106  PubMed

Yoo, SW., Motari, MG., Susuki, K., Prendergast, J., Mountney, A., Hurtado, A. and Schnaar, RL., 2015 "Sialylation regulates brain structure and function," FASEB J. 29(7):3040-53. PMCID: PMC4478807 PubMed​

Metcalf, Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL. and Blankson, JN., 2015, "A murine viral outgrowth assay to detect residual HIV-1 in patients with undetectable viral loads," J Infect Dis. 212:1387-1396. PMCID: PMC4601916 ​ PubMed

Li, Z., He, SQ., Tseng, PY., Xu, Q., Tiwari, V., Yang, F., Shu, B., Zhang, T., Tang, Z., Raja, SN., Wang, Y., Dong, X. and Guan, Y., 2015, "The inhibition of high-voltage-activated calcium current by activation of MrgC11 involves phospholipase C-dependent mechanisms," Neuroscience, 300:393-403. PMCID: PMC4485588  PubMed​

Zhang, W., Wu, J., Ward, MD., Yang, S., Chuang, YA., Xiao, M., Li, R., Leahy, DJ. and Worley, PF., 2015, “Structural basis of arc binding to synaptic proteins: implications for cognitive disease.” Neuron. 22;86(2):490-500. PMCID: PMC4409568 PubMed

Kurbanov, F., Kim, Y., Latanich, R., Chaudhari, P., El-Diwany, R., Knabel, M., Kandathil, AJ., Cameron, A., Cox, A., Jang, YY., Thomas, DL. and Balagopal, A., 2015, "IFNL3 genotype is associated with differential induction of IFNL3 in primary human hepatocytes," Antivir Ther. doi: 10.3851/IMP2974. [Epub ahead of print]  PMCID: unknownPubMed

Zhou, Y., Williams, J., Smallwood, PM. and Nathans, J., 2015, "Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina," PLoS One. 10(12):e0143650.​ ​ PubMed

Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., and Chen, X., 2015, "An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation," Cell Rep. 13(2):315-25. PMCID: PMC4607668 PubMed

Subramanian, M., Timmerman, CK., Schwartz, J.L., Pham, DL. and Meffert, MK., 2015, "Characterizing autism spectrum disorders by key biochemical pathways," Front Neurosci. 9:313.  Review. PMCID: PMC4586332 . PubMed

Hobbs, RP., DePianto, DJ., Jacob, JT., Han, MC., Chung, BM., Batazzi, AS., Poll, BG., Guo, Y., Han, J., Ong, S., Zheng, W., Taube, JM., Čiháková, D., Wan, F. and Coulombe, PA. 2015, "Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes," Nat Genet. 47(8):933-8. PMCID: PMC4520766 ​PubMed​

Moore,CD.*, Ajala, OZ.* and Zhu, H., 2015, "Applications in high-content functional protein microarrays," Curr Opin Chem Biol. 30:21-27.  Review. *equal contribution PubMed

Echeverria, I., Liu, Y., Gabelli, SB., and Amzel, LM., 2015, "Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α," FEBS J. 282(18):3528-42.​ PMCID: PMC4573839 PubMed

Margolis, SS., Sell, GL., Zbinden, MA., and Bird, LM., 2015, "Angelman Syndrome," Neurotherapeutics. 12(3):641-50.​ ​ PubMed

Metcalf Pate, KA., Pohlmeyer, CW., Walker-Sperling, VE., Foote, JB., Najarro, KM., Cryer, CG., Salgado, M., Gama, L., Engle, EL., Shirk, EN., Queen, SE., Chioma, S., Vermillion, MS., Bullock, B., Li, M., Lyons, CE., Adams, RJ., Zink, MC., Clements, JE., Mankowski, JL., and Blankson, JN., 2015, "A Murine Viral Outgrowth Assay to Detect Residual HIV Type 1 in Patients With Undetectable Viral Loads," J Infect Dis. 212(9):1387-96. PubMed

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Baras, AS., Mitchell, CJ., Myers, JR., Gupta, S., Weng, LC., Ashton, JM., Cornish, TC., Pandey, A. and  Halushka, MK., 2015, "miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy," PLoS One. PMID: 26571139  PubMed

Lim, C., Gandhi, S., Biniossek, ML., Feng, L., Schilling, O., Urban, S., Chen, X., 2015, An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation. Cell Rep. 13(2):315-25. PMID: 26440886  PubMed

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Hétié, P., de Cuevas, M. and Matunis, E., 2014, "Conversion of quiescent niche cells to somatic stem cells causes ectopic niche formation in the Drosophila testis," Cell Rep. 7(3):715-21. PMCID: PMC4080611​ PubMed ​

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Salgado, M., Gandhi, S., Buckheit, RW., Berkenblit, GV. and Blankson, JN., 2014, "Evolution of an attenuated HIV-1 isolate in an elite suppressor," AIDS Res Hum Retroviruses. 30(3):284-8. Epub 2013 Nov 13. PubMed

Cox, PM. and Bumpus, NN., 2014, "Structure-Activity Studies Reveal the Oxazinone Ring Is a Determinant of Cytochrome P450 2B6 Activity Toward Efavirenz," ACS Med Chem Lett. 5(10):1156-1161. PMCID: PMC4191608 PubMed​

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McCabe, JM. and Leahy, DJ., 2014, "Smoothened Goes Molecular: New Pieces in the Hedgehog Signaling Puzzle." J Biol Chem, 6: 3500-7 PMCID: PMC4319017 PubMed​

Kelkar, DS., Provost, E., Chaerkady, R., Muthusamy, B., Manda, SS., Subbannayya, T., Selvan, LD., Wang, CH., Datta, KK., Woo, S., Dwivedi, SB., Renuse, S., Getnet, D., Huang, TC., Kim, MS.,, Pinto, SM., Mitchell, CJ., Madugundu, AK., Kumar, P., Sharma, J., Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Keshava Prasad, TS., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, SD. and Pandey, A., 2014, "Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis," Mol Cell Proteomics. 13(11):3184-98. PMCID: PMC4223501 PubMed

Qing, Y., Yin, F., Wang, W., Zheng, Y., Guo, P., Schozer, F., Deng, H., and Pan, D., 2014, "The Hippo effector Yorkie activates transcription by interacting with a histone methyltransferase complex through Ncoa6," Elife, 3.  PMCID: PMC4118621   PubMed

Zhou, Y. and Nathans, J., 2014, "Gpr124 controls CNS angiogenesis and blood-brain barrier integrity by promoting ligand-specific canonical wnt signaling," Dev Cell. 31(2):248-56. PMCID: PMC4223636  PubMed

Rattner, A., Wang, Y., Zhou, Y., Williams, J. and Nathans, JH., 2014, "The role of the hypoxia response in shaping retinal vascular development in the absence of Norrin/Frizzled4 signaling," Invest Ophthalmol Vis Sci. 55(12):8614-25. PMCID: PMC4280883  PubMed

Heydarian, M., Luperchio, TR., Cutler, J., Mitchell, CJ., Kim, M., Pandey, A., Sollner-Webb, B. and Reddy, K., 2014, "Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis," J Proteomics Bioinform. 7. pii: 1000302. PMCID: PMC4276347 PubMed

Tu-Sekine, B., Goldschmidt, H. and Raben, DM., 2014, "Diacylglycerol, phosphatidic acid, and their metabolic enzymes in synaptic vesicle recycling," Adv Biol Regul, 57:147-52. PubMed

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Suarez, A., Ueno, T., Huebner, R., McCaffery, JM. and Inoue, T., 2014, "Bin/Amphiphysin/Rvs (BAR) family members bend membranes in cells," Sci Rep. 4:4693.   PubMed

Cross, BM., Breitwieser, GE., Reinhardt, TA. and Rao, R., 2014, "Cellular calcium dynamics in lactation and breast cancer: from physiology to pathology," Am J Physiol Cell Physiol. 306(6):C515-26. PMCID: PMC3948975 PubMed​

Wong, X., Luperchio, TR. and Reddy, KL., 2014, "NET gains and losses: the role of changing nuclear envelope proteomes in genome regulation," Curr Opin Cell Biol. 28C:105-120.  Review.​ PubMed

Davis, CH., Kim, KY., Bushong, EA., Mills, EA., Boassa, D., Shih, T., Kinebuchi, M., Phan, S., Zhou, Y., Bihlmeyer, NA., Nguyen, JV., Jin, Y., Ellisman, MH. and Marsh-Armstrong, N., 2014, "Transcellular degradation of axonal mitochondria," Proc Natl Acad Sci U S A. 111(26):9633-8.  PMCID: PMC4084443 PubMed

Guzzo, CM., Ringel, A., Cox, E., Uzoma, I., Zhu, H., Blackshaw, S., Wolberger, C. and Matunis, MJ., 2014, "Characterization of the SUMO-Binding Activity of the Myeloproliferative and Mental Retardation (MYM)-Type Zinc Fingers in ZNF261 and ZNF198," PLoS One. 9(8):e105271. PMCID: PMC4136804​ PubMed

Kuang, Z., Cai, L., Zhang, X., Ji, H., Tu, BP. and Boeke, JD., 2014, "High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast," Nat Struct Mol Biol. 21(10):854-63  PMCID: PMC4190017 ​ PubMed

Cieniewicz, AM., Moreland, L., Ringel, AE., Mackintosh, SG., Raman, A., Gilbert, TM., Wolberger, C., Tackett, AJ. and Taverna, SD., 2014, "The bromodomain of Gcn5 regulates site-specificity of lysine acetylation on histone H3," Mol Cell Proteomics,13(11):2896-910.  PMCID: PMC4223480 PubMed

Gilbert, TM., McDaniel, SL., Byrum, SD., Cades, JA., Dancy, BC., Wade, H., Tackett, AJ., Strahl, BD. and Taverna, SD., 2014, "An H3K36me3 binding PWWP protein targets the NuA3 acetyltransferase complex to coordinate transcriptional elongation at coding regions," Mol Cell Proteomics, 13(11):2883-95. PMCID: PMC4223479​ PubMed

Li, Y., Ma, Q., Cherry, CM. and Matunis, EL., 2014, "Steroid signaling promotes stem cell maintenance in the Drosophila testis," Dev Biol. 394(1):129-41.  PMCID: PMC4165524​ PubMed

Kim, YS., Chu, Y., Han, L., Li, M., Li, Z., Lavinka, PC., Sun, S., Tang, Z., Park, K., Caterina, MJ., Ren, K., Dubner, R., Wei, F. and Dong, X., 2014, "Central Terminal Sensitization of TRPV1 by Descending Serotonergic Facilitation Modulates Chronic Pain," Neuron, 81(4):873-87.  PMCID: PMC3943838 PubMed

Prendergast, J., Umanah, GK., Yoo, SW., Lagerlöf, O., Motari, MG., Cole, RN., Huganir, RL., Dawson, TM., Dawson, VL. and Schnaar, RL., 2014, "Ganglioside regulation of AMPA receptor trafficking," J Neurosci. 34(39):13246-58. PMCID: PMC4172811  PubMed

Paix, A., Wang, Y., Smith, H., Lee, CY., Calidas, D., Lu, T., Smith, J., Schmidt, H., Krause, M. and Seydoux, G., 2014, "Scalable and Versatile Genome Editing Using Linear DNAs with Micro-homology to Cas9 Sites in Caenorhabditis elegans," Genetics, 198(4):1347-56.  PMCID: PMC4256755 PubMed

Li, Z., He, SQ., Xu, Q., Yang, F., Tiwari, V., Liu, Q., Tang, Z., Han, L., Chu, YX., Wang, Y., Hin, N., Tsukamoto, T., Slusher, B., Guan, X., Wei, F., Raja, SN., Dong, X. and Guan, Y., 2014, "Activation of MrgC receptor inhibits N-type calcium channels in small-diameter primary sensory neurons in mice," Pain, 155(8):1613-21. PMCID: PMC4104261  PubMed

Brubaker, SW., Gauthier, AE., Mills, EW., Ingolia, NT. and Kagan, JC.,  2014, "A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity," Cell. 2014 Feb 13;156(4):800-11. doi: 10.1016/j.cell.2014.01.021. PMCID: PMC3959641 PubMed

Luperchio, TR., Wong, X. and Reddy, KL., 2014, "Genome regulation at the peripheral zone: lamina associated domains in development and disease," Curr Opin Genet Dev. 25C:50-61.  Review. PubMed

Huebner, RJ. and Ewald, AJ., 2014, "Cellular foundations of mammary tubulogenesis," Semin Cell Dev Biol, 31:124-31. Review.​ PMCID: PMC4116098 PubMed

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Hodge, DL., Berthet, C., Coppola, V., Kastenmüller, W., Buschman, MD., Schaughency, PM., Shirota, H., Scarzello, AJ., Subleski, JJ., Anver, MR., Ortaldo, JR., Lin, F., Reynolds, DA., Sanford, ME., Kaldis, P., Tessarollo, L., Klinman, DM. and Young, HA., 2014, "IFN-gamma AU-rich element removal promotes chronic IFN-gamma expression and autoimmunity in mice," J Autoimmun. 53:33-45. PMCID: PMC4148478 PubMed

Shamir, ER., Pappalardo, E., Jorgens, DM., Coutinho, K., Tsai, WT., Aziz, K., Auer, M., Tran, PT., Bader, JS. and Ewald, AJ., 2014, "Twist1-induced dissemination preserves epithelial identity and requires E-cadherin," J Cell Biol. 204(5):839-56. PMCID: PMC3941052 PubMed

Sluch, VM. and Zack, DJ. 2014, "Stem cells, retinal ganglion cells and glaucoma," Dev Ophthalmol. 53:111-21. PMCID: PMC4547935  PubMed

Chivukula, RR., Shi, G., Acharya, A., Mills, EW., Zeitels, LR., Anandam, JL., Abdelnaby, AA., Balch, GC., Mansour, JC., Yopp, AC., Maitra, A. and Mendell, JT., 2014, "An Essential Mesenchymal Function for miR-143/145 in Intestinal Epithelial Regeneration," Cell.157(5):1104-16. PMCID: PMC4175516​ PubMed

Salgado, M., Swanson, MD., Pohlmeyer, CW., Buckheit, RW 3rd., Wu, J., Archin, NM., Williams, TM., Margolis, DM., Siliciano, RF., Garcia, JV. and Blankson,  JN., 2014, "HLA-B*57 Elite Suppressor and Chronic Progressor HIV-1 Isolates Replicate Vigorously and Cause CD4+ T cell Depletion in Humanized BLT Mice," J Virol. 88:3340-3352  PMCID: PMC3957943 PubMed